EsuBft499_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_20a-0001
Unique Name	EsuBft499_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:128426..129615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7897.ENSLACP00000005052
ProteomeId	EsuBft499_20
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	77
Evalue	9.23e-05
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BHR3@33208\|Metazoa,3CUIP@33213\|Bilateria,48DAM@7711\|Chordata
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_20a	EsuBft499_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 128426..129615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_20a-0001-exon	EsuBft499_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 128426..128699 +
EsuBft499_20a-0001-exon	agat-exon-76133	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 129116..129615 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_20a-0001-cds	EsuBft499_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 128426..128699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_20a-0001	EsuBft499_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 128426..129615 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:128426..129615+
coding sequence from alignment at Scaffold_30:128426..129615+

spliced messenger RNA

>EsuBft499_20a-0001 ID=EsuBft499_20a-0001|Name=EsuBft499_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=774bp|location=Sequence derived from alignment at Scaffold_30:128426..129615+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGGACGAAAACACACACACATAAACACACCACGTTTATTCGCCA
ACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCA
TCGACCTGCATGCAGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTACCA
CTCGACGACATCCCATCTCTGCTTGAGGTTGAGGAAGCGGTACGAGAAAT
GGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCA
AGCTTTTCCTGGACGGAGATCAAGATGCTGACGGTCATTCGACACTTTCA
CGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CAGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTTCTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTTGAGCCTTACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTGACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTNNNNNNNNNNNNNNNN

protein sequence of EsuBft499_20a-0001

>EsuBft499_20 ID=EsuBft499_20|Name=EsuBft499_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MNGTKTHTHKHTTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVP
LDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQDADGHSTLS
RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASLSLTAE
HYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRK
RRLXXXXX

mRNA from alignment at Scaffold_30:128426..129615+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_20a-0001 ID=EsuBft499_20a-0001|Name=EsuBft499_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1190bp|location=Sequence derived from alignment at Scaffold_30:128426..129615+ (Ectocarpus subulatus male Bft15b)
ATGAATGGGACGAAAACACACACACATAAACACACCACGTTTATTCGCCA
ACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCA
TCGACCTGCATGCAGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTACCA
CTCGACGACATCCCATCTCTGCTTGAGGTTGAGGAAGCGGTACGAGAAAT
GGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCA
AGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAATTCCACGCCATT
GTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTAGAAGGATGC
CACCATCAGAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACT
ACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTC
GTCGCTACACGACTGAGCCGCTACTGCTAGCGAGAGGGCATCCTCCCGGA
GGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCG
CCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTC
GCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCT
ACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGACGG
TCATTCGACACTTTCACGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGAGCGTGGAAGTGCTACCGCCGGAACA
GTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCTCAAGATCCGG
CTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTT
GAGCCTTACAGCGGAGCACTACACAAAGCTCAATGAGACCCACCGCCAGT
TCCTGACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCC
CTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGA
GGCCACCGTGCGCAAACGGAGACTNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_30:128426..129615+

>EsuBft499_20a-0001 ID=EsuBft499_20a-0001|Name=EsuBft499_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=774bp|location=Sequence derived from alignment at Scaffold_30:128426..129615+ (Ectocarpus subulatus male Bft15b)
ATGAATGGGACGAAAACACACACACATAAACACACCACGTTTATTCGCCA
ACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCA
TCGACCTGCATGCAGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTACCA
CTCGACGACATCCCATCTCTGCTTGAGGTTGAGGAAGCGGTACGAGAAAT
GGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCA
AGCTTTTCCTGGACGGAGATCAAGATGCTGACGGTCATTCGACACTTTCA
CGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CAGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTTCTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTTGAGCCTTACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTGACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTNNNNNNNNNNNNNNNN