EsuBft4961_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4961_2a-0001
Unique Name	EsuBft4961_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:403383..406055 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft4961_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	TMhelix
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	267
Hectar predicted targeting category	signal anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a	EsuBft4961_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 403383..406055 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a-0001-exon	EsuBft4961_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 403383..406055 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a-0001-exon	agat-five_prime_utr-10895	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_100 403383..403527 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a-0001-cds	EsuBft4961_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 403528..403947 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a-0001-exon	agat-three_prime_utr-17141	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 403948..406055 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4961_2a-0001	EsuBft4961_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 403528..403947 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:403383..406055+
coding sequence from alignment at Scaffold_100:403383..406055+

spliced messenger RNA

>EsuBft4961_2a-0001 ID=EsuBft4961_2a-0001|Name=EsuBft4961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2673bp|location=Sequence derived from alignment at Scaffold_100:403383..406055+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCGGCTCTGAACGGACGGGAATGGGGTGGAGGTGCAAGCACATTCCG
GCGGGCGGTGTTCGCTGTTGCACGTGCTTTTGTCCTCTCTCTCTTCCGCC
CCCGTTTTCCCCTTGTCCGCCCTCTGCCCCGACCCCGCGGTTGGCATGCT
GTTGTCTCTCTTTCTCTGTTCGCCCTTGTCGCGCGTGTTCCCTGTTCCCC
CCCTGCCCGACCCTGGCTACGCTTATGCTCCGCTTGTTCTGTTTTTCGCA
GGTGGCAGGTGGGGGTCTCGATCTCTCGGTGTGTGTGGGTTCCTGTGTAG
CGCTTTAATTTTTTTGGTCAGCCTTGGCGTTGATTATTTCCCGTCGTGGA
GGGCGTTTGCTTCGAAGCCGTCACGACTGGGTTACCTTTGGCGCTGGACC
AAGATCAGAGCCCCCCACATGCCCGATCGTAGCCGCTTTTCTAGCCGATA
CCGTGCGCAGTTGGGAAGCGGGGGAGTGTTAGAGGCAGGGAACAGGGCGC
ATGGGCTACATTGGTACGGAATCGTTGACGGGGGGTTCGTGGAAGGGGAG
ATTCGAGCATGCTAGCTTTTTTTTATTATTGTTGTGCGCCGACGTTGGTG
TGCTAAAGGCGAAGGAGTTTGTGTCTCGTCGAAGGCGATGAAGTATGGCA
TGCATGCGCGCCGCGTTGGCGAAGGCTGATTCCGTGCGGTGATGACGATT
GCACCTCTGTGCCCTGTTTGTGAAGTACCGAGGCGATTGCGGGAAGTCAT
GTGTTTGCTACCTCGATAGCTCGGATACGAACAGACGGATAGGGTGCGTT
CGGCTGCTATGCGTGTTTCGCGTTTAACGCGGTCTCACCGCCACAGACAC
GCAACGCTTGGTCAACACGCTGATGACACAACAAGCTTGATACGAATACT
GTGCAGTCTAGTGAAACGTTAGGGTTGATAACGGTTCGAGCTATTTTGGC
GGCGGGGTTGATGGTCTCTTTGGGCTGTGTACGTAGGCTGCCAAACCCTT
CCCTTTGGCGCCAGTGAGGCTAGCATACGGTTAGGGTTGGGACCAAAGTC
TGCCGTTTGGGGGTTCCCGGATACATATATCACAAGAGGGGATCGCTAGC
TTGCGCACCGCTTTTTTTTACCGATGTTGTTTTCGACGTGGAGATTGGGG
TCGTTTTCGCGAAGTTGCTCGCAGCATACGTTTCGTCTTGAGGGTCAACC
GCATATTTTTATTTGTTGGAAAAGGAGGCGAGTGACTTCCAGGGGGTGGG
CTGTGTCATGTGCCCTGTCCGTGCAACTTTGACATGCATGCGTAGCGAAC
GAAGGGAGTGGGGCAGGTGCGTACTCGAAGAGGGTGCATGCTCTTTCGCT
TTTAGGCCGGTTCATCTCAGTTTTTCTTTTGAGCGGTCGATCGTAGTTCC
CGCGGCAGCAGGATCAGCAGCATTGGCTGTCCACGCCGATGATTTTTTGC
AGACCGCGCCACTCCGTAGGCAGTTGTTGGTATTACGTTAAGCGCTTGAG
GGTAGTAGATTCAACCTCCTCGTATCGAAGCACGAAGAAATCGAGCCCCG
CCCACCGAAGAATTCGAATCGAACCCCGGGCGAGATGAAAAGAGTGGGTT
CGTTCTTCATTTGAGTGGCGGTGGGTTCGTACTTTGGGCAGCCTTGCAAA
GAGAAGATCTTGTTGGAACGAACGGCAGACATGTGCGTGGCGATGTGCCG
GGACTACTTGACTGTGATGCCGTTGTGTCGCGCACGCCAGTTGAAAAGAA
GAACGTGCATGTTGGTGACAATCCTGACAGAAGAGAAGAGTGGATCAGTC
GGATTATACGTCGTACGCGCGGGAAGGATTTGGGTGGAGCAGTAAAGAAG
GTTGTTCTAAATCCGGCCGCTTTCCACGACAAATTGTTAAGTGTTTTCAT
CGTTGATGGTGCTCTTGAGATGAGAGTATCAGCCCTACATGCACGATGCA
CACTTCAGCTTCGTTTTCGGGGGTCGACAAAGGGTAGGCGGGGTAATTCT
CTTGATTATTTAAACTTGGTTCTCTCAGTTGGCCGAAGAATCAACGTCAG
GGTGTTCCAATAGGAGCACCATACCCATGGGGCACTTCACACGCGCCAAG
GTTACTTCAGACCTACCAGACAGACGGCCGCATCATTTATTGTGCCCTTG
CTCTTGTGCTCATCATGGACCAAAGTCCTCGTGCGTGTTTGAAGCTCGTC
CGAGTACGCGGGACTGTATTTTTTCCCGTGATCCATCACCACCCTGTAGG
GATTCCCAGGGAGGAAGAGAAAATTCACGTGGTTCACATCTCTCCCGACA
CATTCATTCCAGGGAGAGCTTCAAATACGCCGGCCGCAACAATCAAACTT
TACCGACGAGATAACATTTCACATCCAAGATGGACTGGGGACAGACACAC
AGAAACATGTGCTTGCGCTTGCATCATGGCATGTCTTCGGATGGATGCGT
AACGTTCTGAAACCTCGTTCGGGGCTATGACATGGCACTTCGTAATTCAG
GGGCAGGATCCGAGTGGTGCGTACGAGGGAGGCTGGCTGACAGTCAACAA
ACGGCTCCTTTCATCCTGTGTTTGACCACAAGAAAAAAAAAAACGCAACT
GCTGTTGGCTTGTGACCACTCAAGTCGTCCGCGTCAGTTGGACCAGCTCG
GACAAAAGAAGGTACTGAGCGGA

protein sequence of EsuBft4961_2a-0001

>EsuBft4961_2 ID=EsuBft4961_2|Name=EsuBft4961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MLLSLFLCSPLSRVFPVPPLPDPGYAYAPLVLFFAGGRWGSRSLGVCGFL
CSALIFLVSLGVDYFPSWRAFASKPSRLGYLWRWTKIRAPHMPDRSRFSS
RYRAQLGSGGVLEAGNRAHGLHWYGIVDGGFVEGEIRAC

mRNA from alignment at Scaffold_100:403383..406055+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4961_2a-0001 ID=EsuBft4961_2a-0001|Name=EsuBft4961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2673bp|location=Sequence derived from alignment at Scaffold_100:403383..406055+ (Ectocarpus subulatus male Bft15b)
CCCCCGGCTCTGAACGGACGGGAATGGGGTGGAGGTGCAAGCACATTCCG
GCGGGCGGTGTTCGCTGTTGCACGTGCTTTTGTCCTCTCTCTCTTCCGCC
CCCGTTTTCCCCTTGTCCGCCCTCTGCCCCGACCCCGCGGTTGGCATGCT
GTTGTCTCTCTTTCTCTGTTCGCCCTTGTCGCGCGTGTTCCCTGTTCCCC
CCCTGCCCGACCCTGGCTACGCTTATGCTCCGCTTGTTCTGTTTTTCGCA
GGTGGCAGGTGGGGGTCTCGATCTCTCGGTGTGTGTGGGTTCCTGTGTAG
CGCTTTAATTTTTTTGGTCAGCCTTGGCGTTGATTATTTCCCGTCGTGGA
GGGCGTTTGCTTCGAAGCCGTCACGACTGGGTTACCTTTGGCGCTGGACC
AAGATCAGAGCCCCCCACATGCCCGATCGTAGCCGCTTTTCTAGCCGATA
CCGTGCGCAGTTGGGAAGCGGGGGAGTGTTAGAGGCAGGGAACAGGGCGC
ATGGGCTACATTGGTACGGAATCGTTGACGGGGGGTTCGTGGAAGGGGAG
ATTCGAGCATGCTAGCTTTTTTTTATTATTGTTGTGCGCCGACGTTGGTG
TGCTAAAGGCGAAGGAGTTTGTGTCTCGTCGAAGGCGATGAAGTATGGCA
TGCATGCGCGCCGCGTTGGCGAAGGCTGATTCCGTGCGGTGATGACGATT
GCACCTCTGTGCCCTGTTTGTGAAGTACCGAGGCGATTGCGGGAAGTCAT
GTGTTTGCTACCTCGATAGCTCGGATACGAACAGACGGATAGGGTGCGTT
CGGCTGCTATGCGTGTTTCGCGTTTAACGCGGTCTCACCGCCACAGACAC
GCAACGCTTGGTCAACACGCTGATGACACAACAAGCTTGATACGAATACT
GTGCAGTCTAGTGAAACGTTAGGGTTGATAACGGTTCGAGCTATTTTGGC
GGCGGGGTTGATGGTCTCTTTGGGCTGTGTACGTAGGCTGCCAAACCCTT
CCCTTTGGCGCCAGTGAGGCTAGCATACGGTTAGGGTTGGGACCAAAGTC
TGCCGTTTGGGGGTTCCCGGATACATATATCACAAGAGGGGATCGCTAGC
TTGCGCACCGCTTTTTTTTACCGATGTTGTTTTCGACGTGGAGATTGGGG
TCGTTTTCGCGAAGTTGCTCGCAGCATACGTTTCGTCTTGAGGGTCAACC
GCATATTTTTATTTGTTGGAAAAGGAGGCGAGTGACTTCCAGGGGGTGGG
CTGTGTCATGTGCCCTGTCCGTGCAACTTTGACATGCATGCGTAGCGAAC
GAAGGGAGTGGGGCAGGTGCGTACTCGAAGAGGGTGCATGCTCTTTCGCT
TTTAGGCCGGTTCATCTCAGTTTTTCTTTTGAGCGGTCGATCGTAGTTCC
CGCGGCAGCAGGATCAGCAGCATTGGCTGTCCACGCCGATGATTTTTTGC
AGACCGCGCCACTCCGTAGGCAGTTGTTGGTATTACGTTAAGCGCTTGAG
GGTAGTAGATTCAACCTCCTCGTATCGAAGCACGAAGAAATCGAGCCCCG
CCCACCGAAGAATTCGAATCGAACCCCGGGCGAGATGAAAAGAGTGGGTT
CGTTCTTCATTTGAGTGGCGGTGGGTTCGTACTTTGGGCAGCCTTGCAAA
GAGAAGATCTTGTTGGAACGAACGGCAGACATGTGCGTGGCGATGTGCCG
GGACTACTTGACTGTGATGCCGTTGTGTCGCGCACGCCAGTTGAAAAGAA
GAACGTGCATGTTGGTGACAATCCTGACAGAAGAGAAGAGTGGATCAGTC
GGATTATACGTCGTACGCGCGGGAAGGATTTGGGTGGAGCAGTAAAGAAG
GTTGTTCTAAATCCGGCCGCTTTCCACGACAAATTGTTAAGTGTTTTCAT
CGTTGATGGTGCTCTTGAGATGAGAGTATCAGCCCTACATGCACGATGCA
CACTTCAGCTTCGTTTTCGGGGGTCGACAAAGGGTAGGCGGGGTAATTCT
CTTGATTATTTAAACTTGGTTCTCTCAGTTGGCCGAAGAATCAACGTCAG
GGTGTTCCAATAGGAGCACCATACCCATGGGGCACTTCACACGCGCCAAG
GTTACTTCAGACCTACCAGACAGACGGCCGCATCATTTATTGTGCCCTTG
CTCTTGTGCTCATCATGGACCAAAGTCCTCGTGCGTGTTTGAAGCTCGTC
CGAGTACGCGGGACTGTATTTTTTCCCGTGATCCATCACCACCCTGTAGG
GATTCCCAGGGAGGAAGAGAAAATTCACGTGGTTCACATCTCTCCCGACA
CATTCATTCCAGGGAGAGCTTCAAATACGCCGGCCGCAACAATCAAACTT
TACCGACGAGATAACATTTCACATCCAAGATGGACTGGGGACAGACACAC
AGAAACATGTGCTTGCGCTTGCATCATGGCATGTCTTCGGATGGATGCGT
AACGTTCTGAAACCTCGTTCGGGGCTATGACATGGCACTTCGTAATTCAG
GGGCAGGATCCGAGTGGTGCGTACGAGGGAGGCTGGCTGACAGTCAACAA
ACGGCTCCTTTCATCCTGTGTTTGACCACAAGAAAAAAAAAAACGCAACT
GCTGTTGGCTTGTGACCACTCAAGTCGTCCGCGTCAGTTGGACCAGCTCG
GACAAAAGAAGGTACTGAGCGGA

Coding sequence (CDS) from alignment at Scaffold_100:403383..406055+

>EsuBft4961_2a-0001 ID=EsuBft4961_2a-0001|Name=EsuBft4961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_100:403383..406055+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTGTCTCTCTTTCTCTGTTCGCCCTTGTCGCGCGTGTTCCCTGT
TCCCCCCCTGCCCGACCCTGGCTACGCTTATGCTCCGCTTGTTCTGTTTT
TCGCAGGTGGCAGGTGGGGGTCTCGATCTCTCGGTGTGTGTGGGTTCCTG
TGTAGCGCTTTAATTTTTTTGGTCAGCCTTGGCGTTGATTATTTCCCGTC
GTGGAGGGCGTTTGCTTCGAAGCCGTCACGACTGGGTTACCTTTGGCGCT
GGACCAAGATCAGAGCCCCCCACATGCCCGATCGTAGCCGCTTTTCTAGC
CGATACCGTGCGCAGTTGGGAAGCGGGGGAGTGTTAGAGGCAGGGAACAG
GGCGCATGGGCTACATTGGTACGGAATCGTTGACGGGGGGTTCGTGGAAG
GGGAGATTCGAGCATGCTAG