Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft468_6 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 172 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1721bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGGACAACTTGTTCGTCGAGAGCGCCTCTGGCCTCACAGAAGAAGAAGTG
CGCAGCGCAATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTT
GAGGGATGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAA
ACGTACACGTCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGT
AGGCCAGTCGTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCG
TCCCGAAGATGTCCGCTCGTAGTTGTACACACATGGAAGAGACGGCGAGC
ACAGCGAAACGGCGTACCTTCTTTCGAAGACTGTGCATTTGTTTACTCAT
GAAACTCAGCTCAAGCGAAGAGCAAAGGGGGGGAGGGAGGTGCAGGCGAC
TTTTCGGGATATGTGGCGGGAGTAGTTTTTTGTTTCGAGAGCAAAGCACT
TTTATTGCCCACGTTCGTTGTTTGCCTTGGGTGAAGTCTCGTGAGGTTGA
ATTTGGCGTTTGTGTTGTGTTGTGCCTCGTTTTGACCTTATGGGAGGCGC
GGTGTCCGCTTTGTCGCGTGCTCTCCCGACATTTTTGGTCTCTGTGTTCC
TGCGTAACCTACATTTTCCTAGTGTCGTTTTACAACCTTCGATATTTCTC
AGGTGCGGTAGCGAGATCTTGGGCAAGATATTCACGGGGAGGACAACGCC
TGAACAATAAAATAAAGCAAATAATTAAGCCCATATCAACACCAGCGCAC
TACCGTCGTGTACATGTACGATGCGTAGGTCGTAGAACACCATCGCTTTC
AGCGTTTTGGTGGTACAGCAGTGCGGGGAAATTCAAACGATGGTATGCAA
GTATGTATTGCAGCACAATAGCAGCAGTGGTTGCGACCTTCAAATCACCT
TGTGTCGTAGGTTTCAAACAACACCTCTTGTGGTCGCCTTTCTGCTGCGA
ATGCGCACCTTTTGACATATGTTTCGCCTTCATCATTGGCCCCGGGGATG
GTGCGTTAGTGGCCCCGGAATTTTAAAGACACACTTTTTTTTGGGAAAAC
GTGGGGTGTCTTTCAAGCGGGGTCCACTTGACACGCATGCAAAAGATCCC
TCAGTTACCTGGATGGATTGTGCGTGCTGCCAGGAGATCCTCTTCGTACC
CAAGCAGCAGCAATTATGACTCTGAGAGTAGCAGCAAGAAGGGCGACAGA
GAGCGTGGACAGCAGTGGGCTGCTGTGGCAGTGGGTGCCAACAGCGGAGT
TCTGGAGTGTGGAGTTGCGCCGCGCACTAAGGGGGTCCGTAGAATCATGC
AATACCGCAAGCGGGGGCAGCTCAAACGGTACTTCACTGCTCCGTTCAAC
ACCACAGGGGGTGAGTGTGGATAGCAGCGCCTTCCGAGGACATAATGTCG
AGTATCCGTGAATCTCAGCCGGCGAGAACTATGTAGTGCTTCCGGAAGGA
ACGAATGAAGAGTAGTATGTGAGGAGGCGTGGTGATACTTTCAAACTCCA
TGTGCAAGTGCAAAGACGTGGGTTGCCGAGTCAAACAAAGGCGATGAGTT
AGAGCCGGTGAAGCAGGTGCGGGAACATCGGATGTTCTTTCCTTCAGGAA
GTGGAGCTGCCAGCAATGCTGACGTCTTCTGTAACCGTGCAACCGCGTCC
AAAAGACCAACTCTCGTTGAAGTTGGATTAAACGCACACTCTTTAGTTGG
AACCCATAATTGCTGGTTGCT back to topprotein sequence of EsuBft468_6a-0001 >EsuBft468_6 ID=EsuBft468_6|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MRTWLSVEDDEEVLRDEVELEMEEVTENMSNVHVEEDVASEVEGDHGRPV
VHASTISEGEVRSRPEDVRS back to topmRNA from alignment at Scaffold_189:367233..369151- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)
CGGACAACTTGTTCGTCGAGAGCGCCTCTGGCCTCACAGAAGAAGAAGTG
CGCAGCGCAATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTT
GAGGGATGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAA
ACGTACACGTCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGT
AGGCCAGTCGTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCG
TCCCGAAGATGTCCGCTCGTAGTTGTACACACATGGAAGAGACGGCGAGC
ACAGCGAAACGGCGTACCTTCTTTCGAAGACTGTGCATTTGTTTACTCAT
GAAACTCAGCTCAAGCGAAGAGCAAAGGGGGGGAGGGAGGTGCAGGCGAC
TTTTCGGGATATGTGGCGGGAGTAGTTTTTTGTTTCGAGAGCAAAGCACT
TTTATTGCCCACGTTCGTTGTTTGCCTTGGGTGAAGTCTCGTGAGGTTGA
ATTTGGCGTTTGTGTTGTGTTGTGCCTCGTTTTGACCTTATGGGAGGCGC
GGTGTCCGCTTTGTCGCGTGCTCTCCCGACATTTTTGGTCTCTGTGTTCC
TGCGTAACCTACATTTTCCTAGTGTCGTTTTACAACCTTCGATATTTCTC
AGGTGCGGTAGCGAGATCTTGGGCAAGATATTCACGGGGAGGACAACGCC
TGAACAATAAAATAAAGCAAATAATTAAGCCCATATCAACACCAGCGCAC
TACCGTCGTGTACATGTACGATGCGTAGGTCGTAGAACACCATCGCTTTC
AGCGTTTTGGTGGTACAGCAGTGCGGGGAAATTCAAACGATGGTATGCAA
GTATGTATTGCAGCACAATAGCAGCAGTGGTTGCGACCTTCAAATCACCT
TGTGTCGTAGGTTTCAAACAACACCTCTTGTGGTCGCCTTTCTGCTGCGA
ATGCGCACCTTTTGACATATGTTTCGCCTTCATCATTGGCCCCGGGGATG
GTGCGTTAGTGGCCCCGGAATTTTAAAGACACACTTTTTTTTGGGAAAAC
GTGGGGTGTCTTTCAAGCGGGGTCCACTTGACACGCATGCAAAAGATCCC
TCAGTTACCTGGATGGATTGTGCGTGCTGCCAGGAGATCCTCTTCGTACC
CAAGCAGCAGCAATTATGACTCTGAGAGTAGCAGCAAGAAGGGCGACAGA
GAGCGTGGACAGCAGTGGGCTGCTGTGGCAGTGGGTGCCAACAGCGGAGT
TCTGGAGTGTGGAGTTGCGCCGCGCACTAAGGGGGTCCGTAGAATCATGC
AATACCGCAAGCGGGGGCAGCTCAAACGGTACTTCACTGCTCCGTTCAAC
ACCACAGGGGGTGAGTGTGGATAGCAGCGCCTTCCGAGGACATAATGTCG
AGTATCCGTGAATCTCAGCCGGCGGTAAGTTGCCCTCGTTGTCTCGACGG
GGCGATGAACCCCTCTATAGATCGTCGTTCGGGACTAGCAGCAGCGGCAG
AAGCAGCAGCGGCAGCATCAGCAGCAGCAGCAGCGGCGGTGTGAACAAAG
TTTTTCCCGAGGCAACCTCGGTGGCAGCGGGTCGGCTGTTCGAGGGACGT
CTTCAATAAGTTGCGCTTGCAGAGAACTATGTAGTGCTTCCGGAAGGAAC
GAATGAAGAGTAGTATGTGAGGAGGCGTGGTGATACTTTCAAACTCCATG
TGCAAGTGCAAAGACGTGGGTTGCCGAGTCAAACAAAGGCGATGAGTTAG
AGCCGGTGAAGCAGGTGCGGGAACATCGGATGTTCTTTCCTTCAGGAAGT
GGAGCTGCCAGCAATGCTGACGTCTTCTGTAACCGTGCAACCGCGTCCAA
AAGACCAACTCTCGTTGAAGTTGGATTAAACGCACACTCTTTAGTTGGAA
CCCATAATTGCTGGTTGCT back to topCoding sequence (CDS) from alignment at Scaffold_189:367233..369151- >EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)
ATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGATGA
GGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAAACGTACACG
TCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGTAGGCCAGTC
GTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCGTCCCGAAGA
TGTCCGCTCGTAG back to top
|