EsuBft468_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft468_4a-0001
Unique NameEsuBft468_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:355528..356773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft468_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length33
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft468_4aEsuBft468_4aEctocarpus subulatus male Bft15bgeneScaffold_189 355528..356773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_4a-0001-exonagat-exon-28075Ectocarpus subulatus male Bft15bexonScaffold_189 355528..355565 +
EsuBft468_4a-0001-exonEsuBft468_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 356218..356323 +
EsuBft468_4a-0001-exonagat-exon-28076Ectocarpus subulatus male Bft15bexonScaffold_189 356579..356773 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_4a-0001-exonagat-five_prime_utr-10530Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 355528..355551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_4a-0001-cdsEsuBft468_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 355552..355565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_4a-0001EsuBft468_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 355552..356773 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft468_4a-0001 ID=EsuBft468_4a-0001|Name=EsuBft468_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=339bp|location=Sequence derived from alignment at Scaffold_189:355528..356773+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAGATTTTGTCGGGGTCGAAGCGATGACTGCCTTGTCCGCCCGGTTCAA
CGGGGTTCGAGACATGACCGCTGCCATCATGTCCAAGTTCGACGCGGACA
TGGCTGCGTGCAGGGACCGGACGGCAGACGGCTGCAACGGCACGGGGCCA
GCAAAACAGGGCAGCAGCACCGACAGCGACACCGACACCGACACCGACAC
CGGCAGCGATGGCGCCATCACTGACATGGACGTCGCCGAGGACGACAAGT
CCATCGGTGGCGACACCGTTGCTGAGGAAGCCGAGTCCGTCCAACCGATC
GACGACGGCAACGACCCACCGAAGCTGGTGGAGCCGTAA
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protein sequence of EsuBft468_4a-0001

>EsuBft468_4 ID=EsuBft468_4|Name=EsuBft468_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=104bp
MTALSARFNGVRDMTAAIMSKFDADMAACRDRTADGCNGTGPAKQGSSTD
SDTDTDTDTGSDGAITDMDVAEDDKSIGGDTVAEEAESVQPIDDGNDPPK
LVEP
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mRNA from alignment at Scaffold_189:355528..356773+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft468_4a-0001 ID=EsuBft468_4a-0001|Name=EsuBft468_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1246bp|location=Sequence derived from alignment at Scaffold_189:355528..356773+ (Ectocarpus subulatus male Bft15b)
CCAGATTTTGTCGGGGTCGAAGCGATGACTGCCTTGTCGTCCTTGAGTTT
GGTTGCCGTAGCTAGGGCTTGTGTCTGCCAAGAGCTTTCAAGCTCGTAAC
ACTTACCATGATGGAGAGCTACTACTTGTGTGCATCGTTGTTGTTTCTGT
TGTTGCTGTTCCCTGCTGCGGTTGATCCTGTTATGCTTGGCCTCTCTCAC
AATTGCTGTTGATTCTGGAAGCTCTGATGCTTGCAGGCTTGCCCCGTTGC
TTCCGCTGTCTCCGTCATACCTATCTAGTCCTATGGCTGGCACGACAAGG
TTGTTACCGTAAATGACACAAGATAACACACCCCCTGGACCGATTTTCAA
ATCTCGATTTCTCAACAGCAGAAAGAGTAATGGCGCCGAAAACGGCGGCG
TTGGAACCATCTCGTCGAGAGCTTTCCAAAAATGTATCGTTTCGTTTGTG
CATCTTCTTCGTCGTGGAGTAATCGAGCTTTGAAAATTGGTCCGGGGGGT
GTGTTATCTTGTGTCATATACGGTATGCTCGGTCGAGCCTGGTGGTGATA
CAGAAACAAAGCAAACTATTATTGTTGCCAACACCGCTACGATTGACCGT
TAGAGTAAAGGGTAGCAAGTGCTACACGACACTAGAACTAACATGCGCCC
AATCTGTTCCCCCCGTCCGACACATGAATGCATGTTGTAGCGCCCGGTTC
AACGGGGTTCGAGACATGACCGCTGCCATCATGTCCAAGTTCGACGCGGA
CATGGCTGCGTGCAGGGACCGGACGGCAGACGGCTGCAACGGCACGGTGA
GTTGGTTCAACGGCAGGCATGTATCGTGAAGCAAGGCGTTGAACACATAA
CAAGAAAGTACGAACACACCACGGTAAACAGCAAGGGTTTGAAAAACGCT
TCCGTTCCCCAGCACTCCCGTCCCATAGTCAAATGCTTATGGCCAGCGAA
ATACAGCATTCTACGAGTACAATATCCCTACCTCTCCTTGGTACTCTCAC
CGACTATTTCACCACGATTGGCCTGTGCGTTGTCTTTCTTTCGCTCAACA
GGGGCCAGCAAAACAGGGCAGCAGCACCGACAGCGACACCGACACCGACA
CCGACACCGGCAGCGATGGCGCCATCACTGACATGGACGTCGCCGAGGAC
GACAAGTCCATCGGTGGCGACACCGTTGCTGAGGAAGCCGAGTCCGTCCA
ACCGATCGACGACGGCAACGACCCACCGAAGCTGGTGGAGCCGTAA
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Coding sequence (CDS) from alignment at Scaffold_189:355528..356773+

>EsuBft468_4a-0001 ID=EsuBft468_4a-0001|Name=EsuBft468_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_189:355528..356773+ (Ectocarpus subulatus male Bft15b)
ATGACTGCCTTGTCCGCCCGGTTCAACGGGGTTCGAGACATGACCGCTGC
CATCATGTCCAAGTTCGACGCGGACATGGCTGCGTGCAGGGACCGGACGG
CAGACGGCTGCAACGGCACGGGGCCAGCAAAACAGGGCAGCAGCACCGAC
AGCGACACCGACACCGACACCGACACCGGCAGCGATGGCGCCATCACTGA
CATGGACGTCGCCGAGGACGACAAGTCCATCGGTGGCGACACCGTTGCTG
AGGAAGCCGAGTCCGTCCAACCGATCGACGACGGCAACGACCCACCGAAG
CTGGTGGAGCCGTAA
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