Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft468_17 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 164 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_004590.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1649bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTACACACTTGGGAGGAAGGAGCCAACTGCAACTTACACACACACCTTGA
GCCTGTTGCAAATCATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGC
CTCGCCTCGGCGGCCGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGC
AAGCGTCGCTGCATCCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGC
CCGCTGCTTCCGCTGGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCC
GTGGTGCCGTTGGTTGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGT
CAATGCGCCGGGATGGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAA
CTGCGGGACTGATCCCCCTCCTGCTAAAGCCCGGGGACGACGCGGCTAGG
GACATGCAGGAGAGGGACGAGGGTCTGTGGGAGCAAAACAAAAAATTGTA
GAGAGGCAGTCACCTGTTTAGGGTAAGCCAACTGGGCGAAGAAGATGAAG
TACGTCGGTTTCGTTACCTCGTTCAGGGGCTGGGCGCCAGCCGCGGGGCG
CGCGCATGATAGAGTGAACGCATTATAGAGTGAACGCACGCCGGGCCCAA
GGTCGTCCTTCGAGTGTAGCTGGGCCGGAGAGGCTCACCGGCGGAAGGGG
AAGGGCACATGAGGCCGAAGGACCAGCGAGCACACAGCCACGGGGACTAT
TTCCTTTGCGGATGGGGGGAGGAGATCGGAGATCATTGGGGGCTCGCGGC
CGGCGCGTCGTCCTTCCGAGCGCAGTTCGTTTTCGCGTTTTCACGCGCTG
AAGTATTGGGTACAATAGGGTTGAGAGCTGTTGTTGGAGGTCAGGGTTCC
ACGAAGCGTCAACATCCACAAAGTAAGGCGACACATACAACGACACAATG
CGTGGCCACATAAGTTTTATTTTTAGAGAAAAGGCTGCGCGTATGTACGG
GCTGAGTAAACGGGTGGAGAGCCCTCTATCGTGATGGCGATGTACACACG
CGCACGCCAAGTCCTCAGCCCGTTTTTGGCACTTGAGGCGCTGCGTTTTG
ATGTGACAATGGGCGAGAGCGTTCTAACCGCAGGAATAGACAGGAATGAA
CAACGACAAGTGTACCTCTCGCCCCTCCCTGCCGGCGGGGCCCTTGTTCT
GCAGGCAAACACCAACAGCACAGAATGACGCGAGGAAAAAGGTCCAGGGG
AACAGAGATGTGTTGAAGGCCTCGTAGTCGTTTATCCGGTCAACAAAAGG
CAATGGGGAGAGCTAGAGGCACCAGCTTCCCGAGATACTTTGAAGCCCTA
TTGGCTTCAGAGTCTGTCACGGAATTAGTTATCACTACGTACATTCACGA
AGTACCTGTGACCACGTGAACGAAGCCCCTTCCTGATTCCTGGATGTACA
TTGCCCTCCCGGCGGGGGGGGCGGGGGGGTGGCCGATGTGTCAGGAATTG
TTTTTCACGTACGCCCTTGTCCGGAAGCCCATTAAACCTCTGCACTGAAC
CCATGTCCTACAGCGGGGTGCAGGTCAATGACCATGCCGGGCTCGATCGA
TGTATGCATTTAGTTTTGTTTGGTTAGGGTTCGCCGGGTACCGTTCACTA
GAGGGAGCATGCTATGTCACGGGGCGTGGCGTACAGCACCTACCCCGTA back to topprotein sequence of EsuBft468_17a-0001 >EsuBft468_17 ID=EsuBft468_17|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MKLFSTTTAVLCLASAADGFVVAPPSSRASVAASGRQCTRMVSPLPAASA
GASSLTTVLQSSVVPLVAAAGGVAEPGTVNAPGWVLPAGAVAVILTAGLI
PLLLKPGDDAARDMQERDEGLWEQNKKL back to topmRNA from alignment at Scaffold_189:461644..466002+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4359bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)
TTACACACTTGGGAGGAAGGAGCCAACTGCAACTTACACACACACCTTGA
GCCTGTTGCAAATCATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGC
CTCGCCTCGGCGGCCGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGC
AAGCGTCGCTGCATCCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGC
CCGCTGCTTCCGCTGGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCC
GTGGTGCCGTTGGTTGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGT
CAATGCGCCGGGATGGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAA
CTGCGGGACTGATCCCCCTCCTGCTAAAGGTGGGTGAAGTATGCGTGTTG
ACGCAGACCTTGCGCAAAACGTCGCAACTCATGTTTTTCCTACTGCAACT
ACATACATATAGTATGCACACACACGTATACAATATACGACACAAGATAA
CACACCCCCTTGACCGATTCTCGAAGCTCGAATCCTAAACTGCAGGAACA
GTCACAGCGCCGAAAACGGCGGCGTTGAAACCGCCTCGTTCATAGCTTTT
CGAAAATGTATCGTTTCGTTTATGCATCCTCTTCGTCGTGGAGCAATCGA
GCTTTGAAAATCCGTACAGGGGGTGCGTTATCTCATGTCATATGCGGTAA
CTTCGGTACAAGACGTGAAAGAGCAGCACATATTGGGCCGTTGACAGAGA
CGGTCCCTGTGCAACAGCAGTGGCAACCACGTTCCCTCTGGTAGGAGGGG
AGAGATGACGGAGGGGAGAGATGACAGACTTTGTGCAAGGGCCTAGACTA
TTCTCTGTAGATCGACTACATACCTTTGACTGTTGCACAATTTTTGCACA
AACTACGAAGTATTATGCATGTGCATGTGGGTACCGAAAAAGCCCGATAC
GCCAACTTGACGAGATGTTTGTCTCAAAAACCACCGTTTTTGGTGTTGGC
TTGTGAGGCAACTCAAATTTGAAGAGTCTACACAAGATCGGCGATGTACC
AGACTGTCTTGTTGAGCCTTACCCACAGGGGAGATATCGCCGTGTGGTGC
TCGGGAAGCCGTAGAGAAACAGATAGTTTCCGCTGACGCTATGGATTCAT
TGCTAATCTATGTCAGACTCGTTTCTATGGATAGCGATGGGTTCGTGGTG
ATACAGTAAGAAAAAAAACAGAGATCGGTCCACAAGTACAGGGGGAGTGC
CACCGTGCCATCTCCCCGGCTCTTGACGGTACATGAATGAATGCACGATT
GCTGAACCCGCTCGACTGCCCAGGACCTAGGCTTGTGTCAGGGTTTCGAT
CGGCTGCTGCCAGACGGTTGCAAGGACAAACGCGTGACAGATATGTTGGC
GTGTCCGGTAACGTACACGACCTGACTCAACTCCTCACCTGCTGTTATTT
TCTCTCCTCGAGAACTGGCTCTCCCCCCCTGGAGTTAGTCAGAAGCCGAA
AGTTAAGCCAAATATCATGCAATCCCGTACGTACACAAGGACAATGACAA
GGCCAACACACACACGCGAGGAGGATGGCAGAAACCAGCAAACAATACGC
GGAGCCAGTCATAACGCAATCGAGTGCTTTGTGGTAGGAACCCCGGCAAA
AGGCTTCATCTGTTTCCGTTTCTGTCTTCAACCCCGGAGAATAACCTAGC
CTCCCCCCTGATCCCCCCGTACTGAAACCTCAAATCAGGACCTTTAGAGG
CTTTTTTATCGCCCTTGCAGATAACACAACAACCATCTCTGTCGACAGAC
GGAAGTCCGGCACAAAATGACCAATGAAGTCATGTCATTGTACCAACACC
AAAAGCAATGTTTTCCGTTTCTTTCCGCACTGAAAGACTGACGCATTTTC
ATGGTCTAGGCGCGAGCGATGCTAGGAAAAGGAACCTTCGATATACCCTC
GCACCTACGTCGTTTCGCGACCCCCCCCTGGTTTGATTTCACAGAACTGT
CTCCAACTTCAATGGTGTTCTCGTGATTCGGTGCCTGCAGCAGCTGTACC
TCGCTTGCAGGCCAGATGCTCCGAATACCTTGTGATGATGACGCCCCCTG
TTTTTTTCGTGCGGTGAACCGTCGCTTGGTTTGTGCGACGGTGGTCCACA
CACACGCATCCGGCTACAGCCCGGGGACGACGCGGCTAGGGACATGCAGG
AGAGGGACGAGGGTCTGTGGGAGCAAAACAAAAAGTGAGAGACAACGGGA
CAGAAGCAAGATCAAGAGTACAAGAAGAGTAGATACAATAGACACCTTGT
TTCTTGTCTTTCTCTCTACCCGTTCTCTCTCCCAGTGGAGAATTTTTCTG
TGCCTCAATAGCGAATAAAGAACGGGCCGGGTCGGGCGGAAGGCATGCCT
TCGTGTTTTGAGCATTGCACAAACTTTATGCAACGATAGCCCGGGCGGGA
TGACGGTGACCCGAGATCGGAAGGGAACGAAAAAGACCGCGTTGCGGCGG
GGGCAGGGGCATCGCTTTGGTGCTTCATTTCATTTAGCTGAGAGTACAAT
GTGCGCATGCCACGATTCTAGCTGAACCCTCGGCCTCGTCGTACGGAGTT
GGGGGTGGAGAGATCACAGTTGTGGCGGGTGGGTGGAATATTCATGGCGG
AAGAAGTTTTAGCTTTGGAGGGATCGGGCCGTCGCCTGGAGCAAATTCGC
GCGCATGGTTGTCACGCATGGGTCGAGTTCCGTTAGCTTACCGAGAGAGA
GCTGGTGTTGGTATCAAACCGCCGCCGCTCGCGGGGGGGAACGTGACCGA
CCCCTTTGGGCCTGTAATCCGAACGCCTGTATGTGATGTTTTCGTTCTGC
ATGGGTATGTATACTGATAGCACTGAGCACGCCCTTGTTCCACTGGTGTC
AGTCTGAGCATGCAAGAAAGATTTTTCTACAACACCCCAGCCCTTGTAAC
GCATTCTGCTCCCCCTACCTGCGCGCTGCACGTTCTCCGCCCCCCTCCCC
CCCCCCTGCACTGCCCGTTCTCTGCGCCCCCCCCCCCCCCCCCCGCGTTC
TCTCATGTGTCTGGCACTGTCTTCCGCTACACTGTCTTCCTCCTTTGGCT
GCGCCCGGCTGCTGCTGATTCGATGTGTCGTTCGTGGTGTTGCGTACAAC
CCAGATTGTAGAGAGGCAGTCACCTGTTTAGGGTAAGCCAACTGGGCGAA
GAAGATGAAGTACGTCGGTTTCGTTACCTCGTTCAGGGGCTGGGCGCCAG
CCGCGGGGCGCGCGCATGATAGAGTGAACGCATTATAGAGTGAACGCACG
CCGGGCCCAAGGTCGTCCTTCGAGTGTAGCTGGGCCGGAGAGGCTCACCG
GCGGAAGGGGAAGGGCACATGAGGCCGAAGGACCAGCGAGCACACAGCCA
CGGGGACTATTTCCTTTGCGGATGGGGGGAGGAGATCGGAGATCATTGGG
GGCTCGCGGCCGGCGCGTCGTCCTTCCGAGCGCAGTTCGTTTTCGCGTTT
TCACGCGCTGAAGTATTGGGTACAATAGGGTTGAGAGCTGTTGTTGGAGG
TCAGGGTTCCACGAAGCGTCAACATCCACAAAGTAAGGCGACACATACAA
CGACACAATGCGTGGCCACATAAGTTTTATTTTTAGAGAAAAGGCTGCGC
GTATGTACGGGCTGAGTAAACGGGTGGAGAGCCCTCTATCGTGATGGCGA
TGTACACACGCGCACGCCAAGTCCTCAGCCCGTTTTTGGCACTTGAGGCG
CTGCGTTTTGATGTGACAATGGGCGAGAGCGTTCTAACCGCAGGAATAGA
CAGGAATGAACAACGACAAGTGTACCTCTCGCCCCTCCCTGCCGGCGGGG
CCCTTGTTCTGCAGGCAAACACCAACAGCACAGAATGACGCGAGGAAAAA
GGTCCAGGGGAACAGAGATGTGTTGAAGGCCTCGTAGTCGTTTATCCGGT
CAACAAAAGGCAATGGGGAGAGCTAGAGGCACCAGCTTCCCGAGATACTT
TGAAGCCCTATTGGCTTCAGAGTCTGTCACGGAATTAGTTATCACTACGT
ACATTCACGAAGTACCTGTGACCACGTGAACGAAGCCCCTTCCTGATTCC
TGGATGTACATTGCCCTCCCGGCGGGGGGGGCGGGGGGGTGGCCGATGTG
TCAGGAATTGTTTTTCACGTACGCCCTTGTCCGGAAGCCCATTAAACCTC
TGCACTGAACCCATGTCCTACAGCGGGGTGCAGGTCAATGACCATGCCGG
GCTCGATCGATGTATGCATTTAGTTTTGTTTGGTTAGGGTTCGCCGGGTA
CCGTTCACTAGAGGGAGCATGCTATGTCACGGGGCGTGGCGTACAGCACC
TACCCCGTA back to topCoding sequence (CDS) from alignment at Scaffold_189:461644..466002+ >EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)
ATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGCCTCGCCTCGGCGGC
CGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGCAAGCGTCGCTGCAT
CCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGCCCGCTGCTTCCGCT
GGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCCGTGGTGCCGTTGGT
TGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGTCAATGCGCCGGGAT
GGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAACTGCGGGACTGATC
CCCCTCCTGCTAAAGCCCGGGGACGACGCGGCTAGGGACATGCAGGAGAG
GGACGAGGGTCTGTGGGAGCAAAACAAAAAATTGTAG back to top
|