EsuBft468_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft468_17a-0001
Unique Name	EsuBft468_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:461644..466002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft468_17
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-TM
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	164
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-26_004590.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a	EsuBft468_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 461644..466002 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a-0001	EsuBft468_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 461708..464804 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a-0001-exon	EsuBft468_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 461644..462022 +
EsuBft468_17a-0001-exon	agat-exon-28154	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 463813..463877 +
EsuBft468_17a-0001-exon	agat-exon-28153	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 464798..466002 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a-0001-exon	agat-five_prime_utr-10529	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_189 461644..461707 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a-0001-cds	EsuBft468_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 461708..462022 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_17a-0001-exon	agat-three_prime_utr-16573	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 464805..466002 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:461644..466002+
coding sequence from alignment at Scaffold_189:461644..466002+

spliced messenger RNA

>EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1649bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTACACACTTGGGAGGAAGGAGCCAACTGCAACTTACACACACACCTTGA
GCCTGTTGCAAATCATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGC
CTCGCCTCGGCGGCCGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGC
AAGCGTCGCTGCATCCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGC
CCGCTGCTTCCGCTGGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCC
GTGGTGCCGTTGGTTGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGT
CAATGCGCCGGGATGGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAA
CTGCGGGACTGATCCCCCTCCTGCTAAAGCCCGGGGACGACGCGGCTAGG
GACATGCAGGAGAGGGACGAGGGTCTGTGGGAGCAAAACAAAAAATTGTA
GAGAGGCAGTCACCTGTTTAGGGTAAGCCAACTGGGCGAAGAAGATGAAG
TACGTCGGTTTCGTTACCTCGTTCAGGGGCTGGGCGCCAGCCGCGGGGCG
CGCGCATGATAGAGTGAACGCATTATAGAGTGAACGCACGCCGGGCCCAA
GGTCGTCCTTCGAGTGTAGCTGGGCCGGAGAGGCTCACCGGCGGAAGGGG
AAGGGCACATGAGGCCGAAGGACCAGCGAGCACACAGCCACGGGGACTAT
TTCCTTTGCGGATGGGGGGAGGAGATCGGAGATCATTGGGGGCTCGCGGC
CGGCGCGTCGTCCTTCCGAGCGCAGTTCGTTTTCGCGTTTTCACGCGCTG
AAGTATTGGGTACAATAGGGTTGAGAGCTGTTGTTGGAGGTCAGGGTTCC
ACGAAGCGTCAACATCCACAAAGTAAGGCGACACATACAACGACACAATG
CGTGGCCACATAAGTTTTATTTTTAGAGAAAAGGCTGCGCGTATGTACGG
GCTGAGTAAACGGGTGGAGAGCCCTCTATCGTGATGGCGATGTACACACG
CGCACGCCAAGTCCTCAGCCCGTTTTTGGCACTTGAGGCGCTGCGTTTTG
ATGTGACAATGGGCGAGAGCGTTCTAACCGCAGGAATAGACAGGAATGAA
CAACGACAAGTGTACCTCTCGCCCCTCCCTGCCGGCGGGGCCCTTGTTCT
GCAGGCAAACACCAACAGCACAGAATGACGCGAGGAAAAAGGTCCAGGGG
AACAGAGATGTGTTGAAGGCCTCGTAGTCGTTTATCCGGTCAACAAAAGG
CAATGGGGAGAGCTAGAGGCACCAGCTTCCCGAGATACTTTGAAGCCCTA
TTGGCTTCAGAGTCTGTCACGGAATTAGTTATCACTACGTACATTCACGA
AGTACCTGTGACCACGTGAACGAAGCCCCTTCCTGATTCCTGGATGTACA
TTGCCCTCCCGGCGGGGGGGGCGGGGGGGTGGCCGATGTGTCAGGAATTG
TTTTTCACGTACGCCCTTGTCCGGAAGCCCATTAAACCTCTGCACTGAAC
CCATGTCCTACAGCGGGGTGCAGGTCAATGACCATGCCGGGCTCGATCGA
TGTATGCATTTAGTTTTGTTTGGTTAGGGTTCGCCGGGTACCGTTCACTA
GAGGGAGCATGCTATGTCACGGGGCGTGGCGTACAGCACCTACCCCGTA

protein sequence of EsuBft468_17a-0001

>EsuBft468_17 ID=EsuBft468_17|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MKLFSTTTAVLCLASAADGFVVAPPSSRASVAASGRQCTRMVSPLPAASA
GASSLTTVLQSSVVPLVAAAGGVAEPGTVNAPGWVLPAGAVAVILTAGLI
PLLLKPGDDAARDMQERDEGLWEQNKKL

mRNA from alignment at Scaffold_189:461644..466002+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4359bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)
TTACACACTTGGGAGGAAGGAGCCAACTGCAACTTACACACACACCTTGA
GCCTGTTGCAAATCATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGC
CTCGCCTCGGCGGCCGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGC
AAGCGTCGCTGCATCCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGC
CCGCTGCTTCCGCTGGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCC
GTGGTGCCGTTGGTTGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGT
CAATGCGCCGGGATGGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAA
CTGCGGGACTGATCCCCCTCCTGCTAAAGGTGGGTGAAGTATGCGTGTTG
ACGCAGACCTTGCGCAAAACGTCGCAACTCATGTTTTTCCTACTGCAACT
ACATACATATAGTATGCACACACACGTATACAATATACGACACAAGATAA
CACACCCCCTTGACCGATTCTCGAAGCTCGAATCCTAAACTGCAGGAACA
GTCACAGCGCCGAAAACGGCGGCGTTGAAACCGCCTCGTTCATAGCTTTT
CGAAAATGTATCGTTTCGTTTATGCATCCTCTTCGTCGTGGAGCAATCGA
GCTTTGAAAATCCGTACAGGGGGTGCGTTATCTCATGTCATATGCGGTAA
CTTCGGTACAAGACGTGAAAGAGCAGCACATATTGGGCCGTTGACAGAGA
CGGTCCCTGTGCAACAGCAGTGGCAACCACGTTCCCTCTGGTAGGAGGGG
AGAGATGACGGAGGGGAGAGATGACAGACTTTGTGCAAGGGCCTAGACTA
TTCTCTGTAGATCGACTACATACCTTTGACTGTTGCACAATTTTTGCACA
AACTACGAAGTATTATGCATGTGCATGTGGGTACCGAAAAAGCCCGATAC
GCCAACTTGACGAGATGTTTGTCTCAAAAACCACCGTTTTTGGTGTTGGC
TTGTGAGGCAACTCAAATTTGAAGAGTCTACACAAGATCGGCGATGTACC
AGACTGTCTTGTTGAGCCTTACCCACAGGGGAGATATCGCCGTGTGGTGC
TCGGGAAGCCGTAGAGAAACAGATAGTTTCCGCTGACGCTATGGATTCAT
TGCTAATCTATGTCAGACTCGTTTCTATGGATAGCGATGGGTTCGTGGTG
ATACAGTAAGAAAAAAAACAGAGATCGGTCCACAAGTACAGGGGGAGTGC
CACCGTGCCATCTCCCCGGCTCTTGACGGTACATGAATGAATGCACGATT
GCTGAACCCGCTCGACTGCCCAGGACCTAGGCTTGTGTCAGGGTTTCGAT
CGGCTGCTGCCAGACGGTTGCAAGGACAAACGCGTGACAGATATGTTGGC
GTGTCCGGTAACGTACACGACCTGACTCAACTCCTCACCTGCTGTTATTT
TCTCTCCTCGAGAACTGGCTCTCCCCCCCTGGAGTTAGTCAGAAGCCGAA
AGTTAAGCCAAATATCATGCAATCCCGTACGTACACAAGGACAATGACAA
GGCCAACACACACACGCGAGGAGGATGGCAGAAACCAGCAAACAATACGC
GGAGCCAGTCATAACGCAATCGAGTGCTTTGTGGTAGGAACCCCGGCAAA
AGGCTTCATCTGTTTCCGTTTCTGTCTTCAACCCCGGAGAATAACCTAGC
CTCCCCCCTGATCCCCCCGTACTGAAACCTCAAATCAGGACCTTTAGAGG
CTTTTTTATCGCCCTTGCAGATAACACAACAACCATCTCTGTCGACAGAC
GGAAGTCCGGCACAAAATGACCAATGAAGTCATGTCATTGTACCAACACC
AAAAGCAATGTTTTCCGTTTCTTTCCGCACTGAAAGACTGACGCATTTTC
ATGGTCTAGGCGCGAGCGATGCTAGGAAAAGGAACCTTCGATATACCCTC
GCACCTACGTCGTTTCGCGACCCCCCCCTGGTTTGATTTCACAGAACTGT
CTCCAACTTCAATGGTGTTCTCGTGATTCGGTGCCTGCAGCAGCTGTACC
TCGCTTGCAGGCCAGATGCTCCGAATACCTTGTGATGATGACGCCCCCTG
TTTTTTTCGTGCGGTGAACCGTCGCTTGGTTTGTGCGACGGTGGTCCACA
CACACGCATCCGGCTACAGCCCGGGGACGACGCGGCTAGGGACATGCAGG
AGAGGGACGAGGGTCTGTGGGAGCAAAACAAAAAGTGAGAGACAACGGGA
CAGAAGCAAGATCAAGAGTACAAGAAGAGTAGATACAATAGACACCTTGT
TTCTTGTCTTTCTCTCTACCCGTTCTCTCTCCCAGTGGAGAATTTTTCTG
TGCCTCAATAGCGAATAAAGAACGGGCCGGGTCGGGCGGAAGGCATGCCT
TCGTGTTTTGAGCATTGCACAAACTTTATGCAACGATAGCCCGGGCGGGA
TGACGGTGACCCGAGATCGGAAGGGAACGAAAAAGACCGCGTTGCGGCGG
GGGCAGGGGCATCGCTTTGGTGCTTCATTTCATTTAGCTGAGAGTACAAT
GTGCGCATGCCACGATTCTAGCTGAACCCTCGGCCTCGTCGTACGGAGTT
GGGGGTGGAGAGATCACAGTTGTGGCGGGTGGGTGGAATATTCATGGCGG
AAGAAGTTTTAGCTTTGGAGGGATCGGGCCGTCGCCTGGAGCAAATTCGC
GCGCATGGTTGTCACGCATGGGTCGAGTTCCGTTAGCTTACCGAGAGAGA
GCTGGTGTTGGTATCAAACCGCCGCCGCTCGCGGGGGGGAACGTGACCGA
CCCCTTTGGGCCTGTAATCCGAACGCCTGTATGTGATGTTTTCGTTCTGC
ATGGGTATGTATACTGATAGCACTGAGCACGCCCTTGTTCCACTGGTGTC
AGTCTGAGCATGCAAGAAAGATTTTTCTACAACACCCCAGCCCTTGTAAC
GCATTCTGCTCCCCCTACCTGCGCGCTGCACGTTCTCCGCCCCCCTCCCC
CCCCCCTGCACTGCCCGTTCTCTGCGCCCCCCCCCCCCCCCCCCGCGTTC
TCTCATGTGTCTGGCACTGTCTTCCGCTACACTGTCTTCCTCCTTTGGCT
GCGCCCGGCTGCTGCTGATTCGATGTGTCGTTCGTGGTGTTGCGTACAAC
CCAGATTGTAGAGAGGCAGTCACCTGTTTAGGGTAAGCCAACTGGGCGAA
GAAGATGAAGTACGTCGGTTTCGTTACCTCGTTCAGGGGCTGGGCGCCAG
CCGCGGGGCGCGCGCATGATAGAGTGAACGCATTATAGAGTGAACGCACG
CCGGGCCCAAGGTCGTCCTTCGAGTGTAGCTGGGCCGGAGAGGCTCACCG
GCGGAAGGGGAAGGGCACATGAGGCCGAAGGACCAGCGAGCACACAGCCA
CGGGGACTATTTCCTTTGCGGATGGGGGGAGGAGATCGGAGATCATTGGG
GGCTCGCGGCCGGCGCGTCGTCCTTCCGAGCGCAGTTCGTTTTCGCGTTT
TCACGCGCTGAAGTATTGGGTACAATAGGGTTGAGAGCTGTTGTTGGAGG
TCAGGGTTCCACGAAGCGTCAACATCCACAAAGTAAGGCGACACATACAA
CGACACAATGCGTGGCCACATAAGTTTTATTTTTAGAGAAAAGGCTGCGC
GTATGTACGGGCTGAGTAAACGGGTGGAGAGCCCTCTATCGTGATGGCGA
TGTACACACGCGCACGCCAAGTCCTCAGCCCGTTTTTGGCACTTGAGGCG
CTGCGTTTTGATGTGACAATGGGCGAGAGCGTTCTAACCGCAGGAATAGA
CAGGAATGAACAACGACAAGTGTACCTCTCGCCCCTCCCTGCCGGCGGGG
CCCTTGTTCTGCAGGCAAACACCAACAGCACAGAATGACGCGAGGAAAAA
GGTCCAGGGGAACAGAGATGTGTTGAAGGCCTCGTAGTCGTTTATCCGGT
CAACAAAAGGCAATGGGGAGAGCTAGAGGCACCAGCTTCCCGAGATACTT
TGAAGCCCTATTGGCTTCAGAGTCTGTCACGGAATTAGTTATCACTACGT
ACATTCACGAAGTACCTGTGACCACGTGAACGAAGCCCCTTCCTGATTCC
TGGATGTACATTGCCCTCCCGGCGGGGGGGGCGGGGGGGTGGCCGATGTG
TCAGGAATTGTTTTTCACGTACGCCCTTGTCCGGAAGCCCATTAAACCTC
TGCACTGAACCCATGTCCTACAGCGGGGTGCAGGTCAATGACCATGCCGG
GCTCGATCGATGTATGCATTTAGTTTTGTTTGGTTAGGGTTCGCCGGGTA
CCGTTCACTAGAGGGAGCATGCTATGTCACGGGGCGTGGCGTACAGCACC
TACCCCGTA

Coding sequence (CDS) from alignment at Scaffold_189:461644..466002+

>EsuBft468_17a-0001 ID=EsuBft468_17a-0001|Name=EsuBft468_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_189:461644..466002+ (Ectocarpus subulatus male Bft15b)
ATGAAGCTCTTCTCGACTACCACCGCCGTCCTTTGCCTCGCCTCGGCGGC
CGATGGATTCGTCGTCGCTCCTCCGTCATCGAGGGCAAGCGTCGCTGCAT
CCGGTAGGCAGTGCACACGAATGGTGTCGCCTCTGCCCGCTGCTTCCGCT
GGCGCATCATCGCTGACGACGGTGCTTCAGTCTTCCGTGGTGCCGTTGGT
TGCTGCTGCTGGCGGGGTGGCGGAGCCGGGAACCGTCAATGCGCCGGGAT
GGGTTCTTCCGGCGGGAGCCGTCGCGGTGATCCTAACTGCGGGACTGATC
CCCCTCCTGCTAAAGCCCGGGGACGACGCGGCTAGGGACATGCAGGAGAG
GGACGAGGGTCTGTGGGAGCAAAACAAAAAATTGTAG