EsuBft451_37a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft451_37a-0001
Unique NameEsuBft451_37a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:718577..719807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4081.Solyc11g062200.1.1
ProteomeIdEsuBft451_37
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1113
Hectar predicted targeting categoryother localisation
Evalue7.57e-43
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMitochondrial protein
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
EC3.1
GO0003824
GO0097159
GO1901363
GO0004518
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft451_37aEsuBft451_37aEctocarpus subulatus male Bft15bgeneScaffold_284 718577..719807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_37a-0001-exonagat-exon-60396Ectocarpus subulatus male Bft15bexonScaffold_284 718577..718834 -
EsuBft451_37a-0001-exonEsuBft451_37a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 718953..719807 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_37a-0001-exonagat-three_prime_utr-16175Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_284 718577..718831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_37a-0001-cdsEsuBft451_37a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 718832..718834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_37a-0001EsuBft451_37Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 718832..719807 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft451_37a-0001 ID=EsuBft451_37a-0001|Name=EsuBft451_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1113bp|location=Sequence derived from alignment at Scaffold_284:718577..719807- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGA
TATTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATGC
GATTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGC
AAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCT
GAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTT
GTGTGTTTCGATTGATTGAAGGGGGGTGTGTTGTTTTGATTTTGGTAGTA
CATGTAGATGATATTTTTGCTGTTGGAGAGAGGGAGAAATGTGACAAGTT
TGGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTTGA
GATGGTATTCTGGGTGCTTTTACGAGAGAAGCAAGGAGACTGGTAGGCTG
ACGATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGT
AGCAGGGGGTAAGAGCGTTCCCATGTCTTCGGGGGTCAAGCTTTCTGACT
TTGATGCGGATGAAGAGGCGACAGATTTTCCGTTTTGTGAGCTAGTAGGA
TCTTTGATGTGGCTGGCGACTCAGATTAGGCCAGACATTGCGAATGCCAT
AAGGGCAGTAGCTAGATATTGCGCGTCTCCGAAGCGGGTGCACTGGGATA
CAGCGATGGGTATATTAGGGTATGCGAGGAGGACGAGTTACATGGGTATT
TCATTTCAGAGAGGTACGGTAGAAGGATTCAGCTTGCAGGGGTACGCTGA
TGCGGATTTTGCGAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGAA
TGATATAACATGCGGAGGAGGCGTTGTGTCTTGGTTTTCCAGAACGCAGA
AATGCGTTACGCTTTCGACAACAGAAGCAGAGTATGTCGCACTAGGCGAC
GTAGTGAAGGAGATTTTGTTTTTGAGGCAGGTTTGGCGATTTATGTTGCC
GAAGGTCAGCATGCCGTGCATCCCAGTCTTTGAGGACAACCAGGGGGCGA
TTCAACTACCGCAGAACCCCATCTCGAACTCGAACTCGAACCACATTGAT
GTAAGGCACCATT
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protein sequence of EsuBft451_37a-0001

>EsuBft451_37 ID=EsuBft451_37|Name=EsuBft451_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=285bp
MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLG
KSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVV
HVDDIFAVGEREKCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRL
TISQQTFTDELAAEYGVAGGKSVPMSSGVKLSDFDADEEATDFPFCELVG
SLMWLATQIRPDIANAIRAVARYCASPKRVHWDTAMGILGYARRTSYMGI
SFQRGTVEGFSLQGYADADFASKAADRRSVSGGMI
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mRNA from alignment at Scaffold_284:718577..719807-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft451_37a-0001 ID=EsuBft451_37a-0001|Name=EsuBft451_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_284:718577..719807- (Ectocarpus subulatus male Bft15b)
ATGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGA
TATTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATGC
GATTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGC
AAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCT
GAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTT
GTGTGTTTCGATTGATTGAAGGGGGGTGTGTTGTTTTGATTTTGGTAGTA
CATGTAGATGATATTTTTGCTGTTGGAGAGAGGGAGAAATGTGACAAGTT
TGGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTTGA
GATGGTATTCTGGGTGCTTTTACGAGAGAAGCAAGGAGACTGGTAGGCTG
ACGATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGT
AGCAGGGGGTAAGAGCGTTCCCATGTCTTCGGGGGTCAAGCTTTCTGACT
TTGATGCGGATGAAGAGGCGACAGATTTTCCGTTTTGTGAGCTAGTAGGA
TCTTTGATGTGGCTGGCGACTCAGATTAGGCCAGACATTGCGAATGCCAT
AAGGGCAGTAGCTAGATATTGCGCGTCTCCGAAGCGGGTGCACTGGGATA
CAGCGATGGGTATATTAGGGTATGCGAGGAGGACGAGTTACATGGGTATT
TCATTTCAGAGAGGTACGGTAGAAGGATTCAGCTTGCAGGGGTACGCTGA
TGCGGATTTTGCGAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGAA
TGATAGTAACATGCGGAGGAGGCGTTGTGTCTTGGTTTTCCAGAACGCAG
AAATGCGTTACGCTTTCGACAACAGAAGCAGAGTATGTCGCNNNNNNNNN
NNNNNNNNNNNNNNNNNNGATAGTAACATGCGGAGGAGGCGTTGTGTCTT
GGTTTTCCAGAACGCAGAAATGCGTTACGCTTTCGACAACAGAAGCAGAG
TATGTCGCACTAGGCGACGTAGTGAAGGAGATTTTGTTTTTGAGGCAGGT
TTGGCGATTTATGTTGCCGAAGGTCAGCATGCCGTGCATCCCAGTCTTTG
AGGACAACCAGGGGGCGATTCAACTACCGCAGAACCCCATCTCGAACTCG
AACTCGAACCACATTGATGTAAGGCACCATT
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Coding sequence (CDS) from alignment at Scaffold_284:718577..719807-

>EsuBft451_37a-0001 ID=EsuBft451_37a-0001|Name=EsuBft451_37a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=858bp|location=Sequence derived from alignment at Scaffold_284:718577..719807- (Ectocarpus subulatus male Bft15b)
ATGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGA
TATTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATGC
GATTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGC
AAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCT
GAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTT
GTGTGTTTCGATTGATTGAAGGGGGGTGTGTTGTTTTGATTTTGGTAGTA
CATGTAGATGATATTTTTGCTGTTGGAGAGAGGGAGAAATGTGACAAGTT
TGGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTTGA
GATGGTATTCTGGGTGCTTTTACGAGAGAAGCAAGGAGACTGGTAGGCTG
ACGATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAGTATGGAGT
AGCAGGGGGTAAGAGCGTTCCCATGTCTTCGGGGGTCAAGCTTTCTGACT
TTGATGCGGATGAAGAGGCGACAGATTTTCCGTTTTGTGAGCTAGTAGGA
TCTTTGATGTGGCTGGCGACTCAGATTAGGCCAGACATTGCGAATGCCAT
AAGGGCAGTAGCTAGATATTGCGCGTCTCCGAAGCGGGTGCACTGGGATA
CAGCGATGGGTATATTAGGGTATGCGAGGAGGACGAGTTACATGGGTATT
TCATTTCAGAGAGGTACGGTAGAAGGATTCAGCTTGCAGGGGTACGCTGA
TGCGGATTTTGCGAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGAA
TGATATAA
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