EsuBft451_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft451_25a-0001
Unique NameEsuBft451_25a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:553959..556685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog518766.Rmar_1191
ProteomeIdEsuBft451_25
Protein domainsPTHR10436
Protein domainsIPR006145
Protein domainsIPR020103
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Notepseudouridine synthase c os:haemophilus ducreyi (strain 35000hp atcc 700724) gn:truc pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl976|Bacteroidetes
Length1726
Hectar predicted targeting categorymitochondrion
Evalue1.62e-38
EggNOG OGsCOG0564@1|root,COG0564@2|Bacteria,4NFS8@976|Bacteroidetes,1FJD9@1100069|Bacteroidetes Order II. Incertae sedis
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001350.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namerluC
KEGG koko:K06177,ko:K06180
EC5.4.99.23,5.4.99.28,5.4.99.29
DescriptionRNA pseudouridylate synthase
COG categoryJ
BRITEko00000,ko01000,ko03009,ko03016
Cross References
External references for this mRNA
DatabaseAccession
GO0001522
GO0003723
GO0009982
GO0034660
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25aEsuBft451_25aEctocarpus subulatus male Bft15bgeneScaffold_284 553959..556685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25a-0001EsuBft451_25Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 553972..556034 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25a-0001-exonEsuBft451_25a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 553959..554127 +
EsuBft451_25a-0001-exonagat-exon-60329Ectocarpus subulatus male Bft15bexonScaffold_284 554764..554917 +
EsuBft451_25a-0001-exonagat-exon-60328Ectocarpus subulatus male Bft15bexonScaffold_284 555283..556685 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25a-0001-exonagat-five_prime_utr-10305Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_284 553959..553971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25a-0001-cdsEsuBft451_25a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 553972..554127 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_25a-0001-exonagat-three_prime_utr-16160Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_284 556035..556685 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft451_25a-0001 ID=EsuBft451_25a-0001|Name=EsuBft451_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1726bp|location=Sequence derived from alignment at Scaffold_284:553959..556685+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTGAGAAAGACATGGCGGTGGCAGGGACGAGGGGTATGGCTGCTTGCA
AGGTCTTGATGCAAGCCCGTGTGCAGAGACAAGCCTGCGCTGCTAGCAGC
CGCGCACGCCCCTTGCAGCCACGGAGGCCATCTTTTCGTGTAGAGGACGT
GCTCTACATGGACAATCACGTGCTTCTCGTAAACAAGCCGGCGGGGCTCC
TGTCTCAGAGCGATCGCACCGGGGACGCGGACGTGGCCGCGCTTGCTCGG
GAGTACGTTCGGGTGGCCGCGAACAAGACTGGGGAGGCGTTCGTTGCCTT
GGTGCATCGCCTCGATCGACCAGTCTCAGGGGTGATGTGCGTGGCTCGCA
CGAGCAAGGCCGCCGCTCGCCTCTCGGCCAGCTTTCGAGCTCGGGACGGC
GTCGAAAAGATCTACCACGCCGTGGTCGCCGGCGGCCTCGCCGGCCGCGG
CATCCGCCAAGACTTCTTGGTGTCTCCGGACGCGAGCGGGGCCGTGGCGA
GACGCGGCAGGGGGCCGAGGACAGGGTTGTCATCCGCCCCAGTCAGAGGC
GGTGCGGGTGGTCGCCTGCTGGCCGCCGGGCCAACGTCGTCGTCGGAGGG
AAAGCTCGCTCAGCTTGAGTGGGAAGCAATCGACGTGTCCCCCTCGTCCG
CCGATCGGCTCCGTTGCCCTCGAACCGGGAACCCGCGAACGCTAGTCCGC
GTGCGGCTCATCACGGGGCGCAAGCACCAGATCAGGGTTCAGCTTGCCGA
GATGGGCCACCCCGTTGTCGGGGACACCCGGTACGGTCGCTCTTCTTGGT
GCCAGTCTAGGGGGGGGGATGCAACCGACGAATCGGCGGTGCCCCCCCCC
CGGGCGGGCAGCATGGAGCCCCTCGAGGACCGGAGTATTTTGCTGCACGC
GAGCGAGTTGATCGTGCCGCACCCGACACGTGTAGGGGCCATGGTTCGAG
CCGTGGCGGCGCCGCCTGGGATGTGGAGCGACCTGTGCGGCCGTTCCTGT
ATTGACGAAGTTTTCGGCGATCAGCCGGTAACAGGGTCGGTTGTAGAATG
TGCTCGTGGTGAGCATTTGACGTGACAATATAACCTGTCTCGGATTGATA
TTCCAATGTTTTCCATCTCTCCACGCCAATCGCTGCTTCGGCAACAGCAA
AAAATACACTTGTTGAACATGAGGCCTTGGATTATTTGAGTGGGATATTG
CCGCTGGTAGTGTGTGGCCATGCAAAAGCTTGAACGCGGGGGTGGCCACT
TCGATGAAAATTCTAACAGCTACCTATGTACGCATCTTCTTTCGTTCACA
ATTCCGCTATTATTAAGCTACCAGAGTCCACCACTGATGCATTTTAACCT
CTTCTTTTCTGCGGCCATTATCACAGCCATACATCTCTTGCGCATGGCGG
AACCCGCAAACTCAGAAATACACGCAAACACATCGCAGCGGGACTACCCT
ATCGGTTTTACGAAAGAACACAAACCCACGCTCCACGCTCTACTCTCGAC
AGGCATGAAACCAAAATGGGCATGTGTATGGACACGTTCAAACCAAGAAG
TGTGGCATACACCCAGCTCTCTCTCTCGTGCGCGCGCGACAACGCATGGC
AAAATTACAACTCGAGATACCCTCCATCCCTTGAAAGGTCTCAATAAAAG
GCAACAGGAGCAATAAGTGCTTCGCCTGAAACCGATGCGTGGTCACTGCT
CTAACGCAATCAACCATGAGTACCCC
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protein sequence of EsuBft451_25a-0001

>EsuBft451_25 ID=EsuBft451_25|Name=EsuBft451_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MAVAGTRGMAACKVLMQARVQRQACAASSRARPLQPRRPSFRVEDVLYMD
NHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRL
DRPVSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQD
FLVSPDASGAVARRGRGPRTGLSSAPVRGGAGGRLLAAGPTSSSEGKLAQ
LEWEAIDVSPSSADRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHP
VVGDTRYGRSSWCQSRGGDATDESAVPPPRAGSMEPLEDRSILLHASELI
VPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARGE
HLT
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mRNA from alignment at Scaffold_284:553959..556685+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft451_25a-0001 ID=EsuBft451_25a-0001|Name=EsuBft451_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2727bp|location=Sequence derived from alignment at Scaffold_284:553959..556685+ (Ectocarpus subulatus male Bft15b)
TGGTGAGAAAGACATGGCGGTGGCAGGGACGAGGGGTATGGCTGCTTGCA
AGGTCTTGATGCAAGCCCGTGTGCAGAGACAAGCCTGCGCTGCTAGCAGC
CGCGCACGCCCCTTGCAGCCACGGAGGCCATCTTTTCGTGTAGAGGACGT
GCTCTACATGGACAATCACGTGAGCTGGACTGGTGTTATGGGTCGTATGT
CATAGGTGGGTGTTGGTTCAGCAGCTTTCTCTCCCTCCGCCCACATCACC
AAAGTATGAACGATGCAACGTGGAGCTCGAGAGGGGTGAATCGCAAGGTC
AGTTTCGCCCGAAAACGGGAACATATTGAACATATTTATATTTGTACCGA
TGCGGCGGGACTGTCAGATCTTGACTCGCTGTGTCTGTCTGACTGTCGGT
CTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGCCTTTCTACATGGGGTG
TGCTCTCAATACGATTCTCACGGTTGTGTGGTGCACCAACAAGCCATCAT
TAGGACACCGAGATTGGTTCGTCCTGCCTTGTGTTCATCGCATGGTCTGC
CTCCTGTAGATGCTACAGCGCCATGCCCATGACGATGAATTTGTGACCAT
GCCGCGCTGTTTCATCTCAATGTTTGCTCCTCATGGAGCATGTGAACGGC
AAGAAACCAGCGTGGCCGCTGTTCAGGAAGAATATCATTATCCTTGTTTG
ACGGCAGTCCTGGCTTGATTGCCGCGCTTGGCTTGGGCAACAACGGGACC
GGTAGGTGCTTCTCGTAAACAAGCCGGCGGGGCTCCTGTCTCAGAGCGAT
CGCACCGGGGACGCGGACGTGGCCGCGCTTGCTCGGGAGTACGTTCGGGT
GGCCGCGAACAAGACTGGGGAGGCGTTCGTTGCCTTGGTGCATCGCCTCG
ATCGACCAGGTGGGGAACGGCTGCTTGTTTTCTGCGGACTTTAGCTACAC
AGAGTGGACGTTTTTCATGTACATGATGCCTTCATTGCAATTTGTGCTGA
ATCCTGGACTCTTATTTTCTGTCTGCGGATAAGGACAAATATTCGTTTGG
TTTTGTATACTACCTCACGACGATTCTACTCCATGCGTTATGTTGTACGC
TATCTGTCCAAAAAATCGATAACCTTGCCTACTACGAACTCTGCAACGCT
CCAGTGCGCGACGCGCGCACACTCAGCTCGTCCTCTGACCGTGTACCCTC
GCCCGCCCCGCTCTTGCTGAAACTGCTGCTGTCAACCCGGGTTTGATTCT
CGTCGTTTCTGCGGTGTTATGAAGTCTCAGGGGTGATGTGCGTGGCTCGC
ACGAGCAAGGCCGCCGCTCGCCTCTCGGCCAGCTTTCGAGCTCGGGACGG
CGTCGAAAAGATCTACCACGCCGTGGTCGCCGGCGGCCTCGCCGGCCGCG
GCATCCGCCAAGACTTCTTGGTGTCTCCGGACGCGAGCGGGGCCGTGGCG
AGACGCGGCAGGGGGCCGAGGACAGGGTTGTCATCCGCCCCAGTCAGAGG
CGGTGCGGGTGGTCGCCTGCTGGCCGCCGGGCCAACGTCGTCGTCGGAGG
GAAAGCTCGCTCAGCTTGAGTGGGAAGCAATCGACGTGTCCCCCTCGTCC
GCCGATCGGCTCCGTTGCCCTCGAACCGGGAACCCGCGAACGCTAGTCCG
CGTGCGGCTCATCACGGGGCGCAAGCACCAGATCAGGGTTCAGCTTGCCG
AGATGGGCCACCCCGTTGTCGGGGACACCCGGTACGGTCGCTCTTCTTGG
TGCCAGTCTAGGGGGGGGGATGCAACCGACGAATCGGCGGTGCCCCCCCC
CCGGGCGGGCAGCATGGAGCCCCTCGAGGACCGGAGTATTTTGCTGCACG
CGAGCGAGTTGATCGTGCCGCACCCGACACGTGTAGGGGCCATGGTTCGA
GCCGTGGCGGCGCCGCCTGGGATGTGGAGCGACCTGTGCGGCCGTTCCTG
TATTGACGAAGTTTTCGGCGATCAGCCGGTAACAGGGTCGGTTGTAGAAT
GTGCTCGTGGTGAGCATTTGACGTGACAATATAACCTGTCTCGGATTGAT
ATTCCAATGTTTTCCATCTCTCCACGCCAATCGCTGCTTCGGCAACAGCA
AAAAATACACTTGTTGAACATGAGGCCTTGGATTATTTGAGTGGGATATT
GCCGCTGGTAGTGTGTGGCCATGCAAAAGCTTGAACGCGGGGGTGGCCAC
TTCGATGAAAATTCTAACAGCTACCTATGTACGCATCTTCTTTCGTTCAC
AATTCCGCTATTATTAAGCTACCAGAGTCCACCACTGATGCATTTTAACC
TCTTCTTTTCTGCGGCCATTATCACAGCCATACATCTCTTGCGCATGGCG
GAACCCGCAAACTCAGAAATACACGCAAACACATCGCAGCGGGACTACCC
TATCGGTTTTACGAAAGAACACAAACCCACGCTCCACGCTCTACTCTCGA
CAGGCATGAAACCAAAATGGGCATGTGTATGGACACGTTCAAACCAAGAA
GTGTGGCATACACCCAGCTCTCTCTCTCGTGCGCGCGCGACAACGCATGG
CAAAATTACAACTCGAGATACCCTCCATCCCTTGAAAGGTCTCAATAAAA
GGCAACAGGAGCAATAAGTGCTTCGCCTGAAACCGATGCGTGGTCACTGC
TCTAACGCAATCAACCATGAGTACCCC
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Coding sequence (CDS) from alignment at Scaffold_284:553959..556685+

>EsuBft451_25a-0001 ID=EsuBft451_25a-0001|Name=EsuBft451_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_284:553959..556685+ (Ectocarpus subulatus male Bft15b)
ATGGCGGTGGCAGGGACGAGGGGTATGGCTGCTTGCAAGGTCTTGATGCA
AGCCCGTGTGCAGAGACAAGCCTGCGCTGCTAGCAGCCGCGCACGCCCCT
TGCAGCCACGGAGGCCATCTTTTCGTGTAGAGGACGTGCTCTACATGGAC
AATCACGTGCTTCTCGTAAACAAGCCGGCGGGGCTCCTGTCTCAGAGCGA
TCGCACCGGGGACGCGGACGTGGCCGCGCTTGCTCGGGAGTACGTTCGGG
TGGCCGCGAACAAGACTGGGGAGGCGTTCGTTGCCTTGGTGCATCGCCTC
GATCGACCAGTCTCAGGGGTGATGTGCGTGGCTCGCACGAGCAAGGCCGC
CGCTCGCCTCTCGGCCAGCTTTCGAGCTCGGGACGGCGTCGAAAAGATCT
ACCACGCCGTGGTCGCCGGCGGCCTCGCCGGCCGCGGCATCCGCCAAGAC
TTCTTGGTGTCTCCGGACGCGAGCGGGGCCGTGGCGAGACGCGGCAGGGG
GCCGAGGACAGGGTTGTCATCCGCCCCAGTCAGAGGCGGTGCGGGTGGTC
GCCTGCTGGCCGCCGGGCCAACGTCGTCGTCGGAGGGAAAGCTCGCTCAG
CTTGAGTGGGAAGCAATCGACGTGTCCCCCTCGTCCGCCGATCGGCTCCG
TTGCCCTCGAACCGGGAACCCGCGAACGCTAGTCCGCGTGCGGCTCATCA
CGGGGCGCAAGCACCAGATCAGGGTTCAGCTTGCCGAGATGGGCCACCCC
GTTGTCGGGGACACCCGGTACGGTCGCTCTTCTTGGTGCCAGTCTAGGGG
GGGGGATGCAACCGACGAATCGGCGGTGCCCCCCCCCCGGGCGGGCAGCA
TGGAGCCCCTCGAGGACCGGAGTATTTTGCTGCACGCGAGCGAGTTGATC
GTGCCGCACCCGACACGTGTAGGGGCCATGGTTCGAGCCGTGGCGGCGCC
GCCTGGGATGTGGAGCGACCTGTGCGGCCGTTCCTGTATTGACGAAGTTT
TCGGCGATCAGCCGGTAACAGGGTCGGTTGTAGAATGTGCTCGTGGTGAG
CATTTGACGTGA
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