EsuBft451_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft451_18a-0001
Unique NameEsuBft451_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:486661..491037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft451_18
Protein domainsIPR023184
Protein domainsIPR007918
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length169
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinol-cytochrome C reductase hinge domain
Ec32 orthologEc-14_001440.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18aEsuBft451_18aEctocarpus subulatus male Bft15bgeneScaffold_284 486661..491037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18a-0001EsuBft451_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 487833..490757 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18a-0001-exonEsuBft451_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 486661..487886 -
EsuBft451_18a-0001-exonagat-exon-60296Ectocarpus subulatus male Bft15bexonScaffold_284 488512..488634 -
EsuBft451_18a-0001-exonagat-exon-60295Ectocarpus subulatus male Bft15bexonScaffold_284 490689..491037 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18a-0001-exonagat-three_prime_utr-16154Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_284 486661..487832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18a-0001-cdsEsuBft451_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 487833..487886 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft451_18a-0001-exonagat-five_prime_utr-10299Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_284 490758..491037 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft451_18a-0001 ID=EsuBft451_18a-0001|Name=EsuBft451_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1698bp|location=Sequence derived from alignment at Scaffold_284:486661..491037- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCGACAGCAGTCGAGGGAGGGCGCAGGGACCAAGGACAGAGGAGATAG
GACAGTGGAGATTGAGGTTGGTGTGGAGGAAAGCTTGAGGCTGACAACAG
CAAGTGTGGAGGAGGAATACTGGACCGAAGTTGTTTATCGGGTTCTCCGC
CACCTTTGTCTCTCAGACGCGTCGTTTGCCTCACATACCCTGCGTCGTTC
AGCGGCAGTTGGCATCTCGTCTGCTGCCATCACACACGCGGGCGGCCCTG
TGTTCGACGCTGCTGGGCGAACAACTCAGAATGTCTGTGGAGAATGACAT
GCGCGCCGAACAACACGAGATTACAAATCCGGTTGAAGAGTGCAAAAAGT
GGCAAAAAAAGTACTATCGGTGCGTCAAGAAGTTCGGGCGTGGGTACATG
CGGGGAGAGGCGAGGTCGGAGGAAAGAGACGACTGCCTGGAACGCTTCGA
CGACTTCCAGAAGTGTGTCCTGGATGCCGCACGAAAAATGCAGGAGCAGC
GCAGCGCGCGTAAGGGCTGGTGGTGACAAGCTGGGGAGGATGGACGTTGG
CGGAGAAGCTGTTGCGGTGACGCGCGGAAACATGCTGTAGAGTTACAAAT
TGAATATGAAGCACACAGCAGTTTAGGATTCGGCCGGGGGAACCGGGGTT
GGGTGGGGCACCGACGTTTTTTAGGACCCAGACATGTCCGCTACCGTTGC
CGCTGCGATTGGAGAATGTTGGCTTTTGGGGTATATATACGGCCAAGACA
TGGAGGAGATATTACGCACGGGTACGTCTCCTTCGGGCGCTCCTCGGTCA
GTCGGATGTAGCGGGCGATGGGGTTGCCCTGATTCAGTTGAAACGCGTGC
TCGCACTGCACGTGGGGCGAGGGAGGAGACACGGTGCTCTTTTTGATGCT
TGTTGGCGCGGCGTCAGGAGAACGCGTTTGCGGGGAGGTGAGGGGTTTGG
GGTTGAGGAATAGGCTGTTGACGGAAATACGCCTCTGCTTGGGTGTGGCG
GAGCAAGCCCACTTGGGCTATTTACGTCAGTGTTGTTGTTAGCGTCGGTG
GCGCGTGAGAAAGTTGGTGGGTGTTGTATGGCTGGCTTTGTGCCGATTTG
AATTGTTTGAAGAGTTTCACCTCTCACATTAGCAGGTTGTCTAGGTACCA
ATTTTACCTCGTGTTTTCAGCTTTACTCGTTTGGTGCCACTGTGGCAACC
CTCTGTCATGCCCTCCGTGTTTATGTAAATGTAAAGTAACTATTATTGTA
TTGTGGTGCTGATTTCCTGTTGCTGGGTTTGGTGCAAAGGAGTGTACTGA
TATAATTGAAGTCACAACTCTGTTCCAGTTAGTGTGCCTGCCTGTCCAGC
GCTGGATTGGCCGAGCTGCTTGTTTTCGCGCCGCCGGCGGCTATGCGCTG
GGGCGGGGCGGTCGCGGGATGTAAGCGGGGGTTTACCTTTGGAGGGCTGC
GCGCATGGGCGTAGTCTACAAACCCATATGCGCTGATAGTTGTTCAAGAG
CCTCGCTGCTTCTTCCGTGGCTGTTGCATCGCTGTTTGTTGCTCGACGTT
TACAAGTAAGGATTATTCACCATGTTTCCACCTAGCGATCAGCATCTAGT
CTGGTTTGCAAGACAAGACTTGTGTTCTTCTCTGCGGCAGTGAACTTCGG
CAACGAATGCTCCCCATTTTCAGGTCCCCGCACCGCGTGGTCTAGTGG
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protein sequence of EsuBft451_18a-0001

>EsuBft451_18 ID=EsuBft451_18|Name=EsuBft451_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MSVENDMRAEQHEITNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERD
DCLERFDDFQKCVLDAARKMQEQRSARKGWW
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mRNA from alignment at Scaffold_284:486661..491037-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft451_18a-0001 ID=EsuBft451_18a-0001|Name=EsuBft451_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4377bp|location=Sequence derived from alignment at Scaffold_284:486661..491037- (Ectocarpus subulatus male Bft15b)
GTGCGACAGCAGTCGAGGGAGGGCGCAGGGACCAAGGACAGAGGAGATAG
GACAGTGGAGATTGAGGTTGGTGTGGAGGAAAGCTTGAGGCTGACAACAG
CAAGTGTGGAGGAGGAATACTGGACCGAAGTTGTTTATCGGGTTCTCCGC
CACCTTTGTCTCTCAGACGCGTCGTTTGCCTCACATACCCTGCGTCGTTC
AGCGGCAGTTGGCATCTCGTCTGCTGCCATCACACACGCGGGCGGCCCTG
TGTTCGACGCTGCTGGGCGAACAACTCAGAATGTCTGTGGAGAATGACAT
GCGCGCCGAACAACACGAGATTACAAATCCGGTTGAAGAGTGCAAAAAGG
TGCGGGGCGATATCTGTACTCCTAAACTTTGGGTACATAAAACACTACTT
CCGTGCACTACACAGCAGTACTGCTGTTCATTTTTTTAGTGTGAATTCAC
ATCTGACGCATCATGAATTAGTCGTCTACAGACAGTCTGACCTACATTAC
AATAATGTGCCACATGGTGGAAATGTGCGCTCTGTGTGTATAGGAACCGC
TTGGATGTACAGTCGAGGGACCTGTAGAGTGCTGGTACGTGCGCAGAACG
ATCACCGGCACTAAACTGGGCACCCGGCACTATTGCGAAGAGTACCAAAA
CGGCACTATTGAGGGCTGCCCAATCCCTCATTAGTGCCGGTCTGGCACTA
TTGAAGACGTGTTTGATTTATGGTGTGGCGCCCACGCTTGTGGGGCCAAC
AGAGTACCAAATGGATCGACATTTACGTGAAGTTCTAGCGTGGGGGTGGG
CAGACTTTCTCCACCCTGTCGAACCCACAAGAGTTAGGTGAAAAATAAAA
TAGTTGCATTTCGGGCTACAGCAGATCCTCACTAGCACTAGTCGACGGCG
AAACCGGAAGACACGCGTCATGCACCCGATTAACCGGTGACGGCAGAAAC
TGCTTAAAAAGCTCCCGTTCGTACAATGCTTTTCGGGTCAGACTCTGCAA
GTATGTGTACCCGATTTGTCTGTGTGTGTTGTCTGTCTTCTGCCTGGTTG
CGTGTGTTTCTTTTTCAAGTAGCATCGACCGCGCTAACCGGCTGACCAAT
GAAAAGACGTCAGTCTCAGTGCGGTTGACAACACAAAACACTTCTAAATG
CCATGAACCGGGACCCCGTGAGGGGGCGGCTAAGCTGTTTTCCGGGTTAA
AGACAGAAACGGTAGCAACAGAAGAAAACTGCACGTGCCTACCGAGGCTG
CTACCTTGCACACGAGTTCGTTTTGGGGTGCTTTCACCATCATCCTCCTT
GCTTTCACGAGCATCACTTTCATCGTTATTTTACAGCTATTTCTCGGCAG
TTCTTTTCTTGCCCTGCGCCGTTTGTTGTGGGAAAGGTCATCCGGCTTAA
AGCTCTTGCTCTCCTCCCTCCATGATTCCCTCCTCGATTGCTGTCTTGGT
TGTTCTCTTGACCTCTCGTTCCCTCTCCTCCTCCTTCATTGCTACTAAAT
GAATTCCTCTCATTGACATCATCCTCTTCTTTATCTGCACTAGCTACTGA
GATCTCAACCTTGGCCGTGGTGGAAATTGGTCGATCAGGAGTCCATGACG
TTTGAAAACATCGCGATTTTGTACCGACAGAAAACGAACCAGCTCGAAGG
TAAACCGTCTCCGAATACTGTTGGTGTGATAAGCCTTCAGGCGAAGCAAG
GCTGTTTCGTCGTGTGCGTGTGTTTTGATTAATAGCTTCGATCGCGCTAA
ACGGACTCGTGTGTGTGCATGCGCGGGTGAACCGGCACTATTGGGGGTTA
CAGCCCCGCCCAACCGGCACTATACCGGGCAAACTCTCAATAGTGCCGGT
CTGACACTATTACGAGCTCTGCCTGTGTCCAGAGATTTTACCGGCACTAT
ACCGGGCACCTGGCACTATTCAACCGGCACTGTACAGGTTCCTCGACTGT
ACGTACACACGTTTACAATGCTGCCTAAGCTTCAACGGTCCTTCCTTGAA
AGGTACCTGCGCACACGTTCTTGCCATGATCATTAGCTTGGCGCTGCCAG
CGTCCAGGGTAGCGTGATCGGAAATGAACGGGTTGTGTCTGCATTAATGT
CTCAAGAGTGCAAGTCGCCTGTGCACATCGTGTACGCAAAGACAGCCGCC
CATGGACATATTGTACGCAACCATCATTCTAGCTTCTTCTGCTGATAACC
TTGTATGGAAAAGCTTGTGGCGATGGCTCGACCTCACGCTCCCATTTCAC
CACTGACCTTGTTTTTGCCCCCTGCTTTGAAGGGCACACACACACACACA
CACACACACGACTGACGACTTTTCATTGATCAGCCGAATGGCGCAGTCGA
CGCTGCTTAAGAAAACGCACACATGGTCCAACGCCACCTTTGTTTTTTAT
CAGTGGCAAAAAAAGTACTATCGGTGCGTCAAGAAGTTCGGGCGTGGGTA
CATGCGGGGAGAGGCGAGGTCGGAGGAAAGAGACGACTGCCTGGAACGCT
TCGACGACTTCCAGAAGTGTGTCCTGGTAAGCAAGAGCACCTGACACGCG
CACGTGCACAGCCGATTTCTGGGTTGCTTGTCTTCTAGCCGAGGCAGCAG
CGCGGGATCCATACCATGGGTCTTTGGTCGTGCACGCTTGGAATCACAAT
TGTATTGTATGGGCCGCTGTTGAGCGAGGTACGCTTTCGCCCGGTGTAGC
CAAAACAAGTAGGCCCGCCTGTAGTGTGTTGCGAACAGCTTGTCTTCATG
ACTGTTCCCCTGACTGCTGTTCAGGTTTGTAGTGTCAATTTGCGCCGTCC
TTGTGTAGAAGGTGAAGAATGCAGACTAACAATGACGGGAGCATCGATTA
TCGATTGCGTGAAGTCAATAGTTACTTACTTGGTGCTGACGACATGCTAC
GAGCGTAGCCCAGCGAGAAAAGAAAAATCATTTCAAGAAACCGAAATATC
TTTCATGAGCTAATTTTTGCAAAGGGATACTTCTTCACGACGGGTGTAGT
AGTACGATTGCAAAACCACACCTCCCAACACACGAAATTACTCATGATGT
TTACCGCCCCCGTACGAACGACTGCTGTACCGCGCGCGCTTTCCTTCATG
TCTCAATCTCACCGGGCATGTTCGGCGTGTTTTCATTTCAACCATCGCCA
GGATGCCGCACGAAAAATGCAGGAGCAGCGCAGCGCGCGTAAGGGCTGGT
GGTGACAAGCTGGGGAGGATGGACGTTGGCGGAGAAGCTGTTGCGGTGAC
GCGCGGAAACATGCTGTAGAGTTACAAATTGAATATGAAGCACACAGCAG
TTTAGGATTCGGCCGGGGGAACCGGGGTTGGGTGGGGCACCGACGTTTTT
TAGGACCCAGACATGTCCGCTACCGTTGCCGCTGCGATTGGAGAATGTTG
GCTTTTGGGGTATATATACGGCCAAGACATGGAGGAGATATTACGCACGG
GTACGTCTCCTTCGGGCGCTCCTCGGTCAGTCGGATGTAGCGGGCGATGG
GGTTGCCCTGATTCAGTTGAAACGCGTGCTCGCACTGCACGTGGGGCGAG
GGAGGAGACACGGTGCTCTTTTTGATGCTTGTTGGCGCGGCGTCAGGAGA
ACGCGTTTGCGGGGAGGTGAGGGGTTTGGGGTTGAGGAATAGGCTGTTGA
CGGAAATACGCCTCTGCTTGGGTGTGGCGGAGCAAGCCCACTTGGGCTAT
TTACGTCAGTGTTGTTGTTAGCGTCGGTGGCGCGTGAGAAAGTTGGTGGG
TGTTGTATGGCTGGCTTTGTGCCGATTTGAATTGTTTGAAGAGTTTCACC
TCTCACATTAGCAGGTTGTCTAGGTACCAATTTTACCTCGTGTTTTCAGC
TTTACTCGTTTGGTGCCACTGTGGCAACCCTCTGTCATGCCCTCCGTGTT
TATGTAAATGTAAAGTAACTATTATTGTATTGTGGTGCTGATTTCCTGTT
GCTGGGTTTGGTGCAAAGGAGTGTACTGATATAATTGAAGTCACAACTCT
GTTCCAGTTAGTGTGCCTGCCTGTCCAGCGCTGGATTGGCCGAGCTGCTT
GTTTTCGCGCCGCCGGCGGCTATGCGCTGGGGCGGGGCGGTCGCGGGATG
TAAGCGGGGGTTTACCTTTGGAGGGCTGCGCGCATGGGCGTAGTCTACAA
ACCCATATGCGCTGATAGTTGTTCAAGAGCCTCGCTGCTTCTTCCGTGGC
TGTTGCATCGCTGTTTGTTGCTCGACGTTTACAAGTAAGGATTATTCACC
ATGTTTCCACCTAGCGATCAGCATCTAGTCTGGTTTGCAAGACAAGACTT
GTGTTCTTCTCTGCGGCAGTGAACTTCGGCAACGAATGCTCCCCATTTTC
AGGTCCCCGCACCGCGTGGTCTAGTGG
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Coding sequence (CDS) from alignment at Scaffold_284:486661..491037-

>EsuBft451_18a-0001 ID=EsuBft451_18a-0001|Name=EsuBft451_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_284:486661..491037- (Ectocarpus subulatus male Bft15b)
ATGTCTGTGGAGAATGACATGCGCGCCGAACAACACGAGATTACAAATCC
GGTTGAAGAGTGCAAAAAGTGGCAAAAAAAGTACTATCGGTGCGTCAAGA
AGTTCGGGCGTGGGTACATGCGGGGAGAGGCGAGGTCGGAGGAAAGAGAC
GACTGCCTGGAACGCTTCGACGACTTCCAGAAGTGTGTCCTGGATGCCGC
ACGAAAAATGCAGGAGCAGCGCAGCGCGCGTAAGGGCTGGTGGTGA
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