EsuBft446_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft446_5a-0001
Unique NameEsuBft446_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:246747..250306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZY5
ProteomeIdEsuBft446_5
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length111
Hectar predicted targeting categoryother localisation
Evalue1.33e-168
EggNOG OGs2EAKV@1|root,2SGUA@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_003620.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft446_5aEsuBft446_5aEctocarpus subulatus male Bft15bgeneScaffold_373 246747..250306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_5a-0001EsuBft446_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 246807..250306 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_5a-0001-exonagat-exon-79245Ectocarpus subulatus male Bft15bexonScaffold_373 246747..246941 -
EsuBft446_5a-0001-exonEsuBft446_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 247902..248127 -
EsuBft446_5a-0001-exonagat-exon-79244Ectocarpus subulatus male Bft15bexonScaffold_373 248742..248880 -
EsuBft446_5a-0001-exonagat-exon-79246Ectocarpus subulatus male Bft15bexonScaffold_373 249757..250306 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_5a-0001-exonagat-three_prime_utr-16031Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 246747..246806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_5a-0001-cdsEsuBft446_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 246807..246941 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1110bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GCAAGGCGGGGTTCATGCAGCTCTTCTACGCTAGCCAATGCCCTGTTACC
GGGGACCTGGACGGCGAGTACCGAGCCCGCACGCTCAACATGGGCGTCTT
GCACCCGATCACCGCTATCATCACGCACCGGATATGGGGGCCAGGGAGGT
GGCTCGGGAAGGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTC
GCTTCCGAGTCGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCG
CTGCTTCCGGTTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGT
CTTCGGAGCTCGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGC
GGCATGCGGGACGAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG
GTCATGTGGCCTCAGCAACGGTCAGCGAGGGGCCACAGGAGGAAAGAGCG
TACACTCACC
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protein sequence of EsuBft446_5a-0001

>EsuBft446_5 ID=EsuBft446_5|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=349bp
MIEHVFADPPPYSKMPHTSATLCNILSHTFQPRLKQGSMKRAFVLTVVPL
VSSASLAAAFVCPAPATATSAAFTPNRPRLAGDASSSSASATIAPLRPAR
DLHRQQRQRGRHLVASLGGGVPEVAAVVISSTSYVVSWLVGTLVAASIAN
FLQGRPYSDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPVT
GDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLF
ASESKGIGLPSDTQRERCFRFSQSSDSVFDRGVSSELDYARAGKNGPLFG
GMRDEVRKVNDKLFIGLGYIQAFGGKYNSAPFVMEGPPVGEFSSPDKSL
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mRNA from alignment at Scaffold_373:246747..250306-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3560bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GTGCGTGGCTTCCGTGTTGTGCAGTGGCCGCAATTTTGCCGTCGCTCTGG
TTGCGTAGGGATTCTGTCCTCAGGTTGCTCTCTGTCTTTGCTGACTATGA
AGTTCAACGCTGCTTCACCCGAACTTCAGCCAACGGAGGTGCTGTACGTG
GTTCTCCCTACTGGTGTTGCGTCGGTTGCTGTTGGTACCCCTGTTGCCTA
CTCCACGCGAGAATCAGGAATCGCTACAGTATTTTCACAATGCCGGGCTA
CATGGCAGGCTCGACACGGGGGGCATTCCGACATCCGCATATCCTCGCGT
ACATGAGGCGGGAGAGGACGAAGGTGGGGTTACGCATGTCGCCCCACATA
TTTTTTAATTCGAAAGTTCCCCCCACGTGTTTCGACTGCACATACAGTAG
TAGCAACGAACAGAGGGGGGGGGATATCGCTATATGCTGCCCGAGGAACA
GTACAAATACAGGTAGCGTGTCCGTTAACGCTGTAGAGTTGTTGCTAATT
TATCCCGGACGCTTTTCTGTTGATGGAGATGACCTGGCCGTGTAGAAAAA
ACAAAAAAAAAAACGCTGCCCACGTTGCACCCGGCAGATCTTCTACATAG
ACTATAAGTTGTGTTGAGGGTGTGCATGATCCCCAAGAACAAAGATATCC
TCGTCCCTCGCCCCAAGAAAAGCAACCAAGTATCCTGTCCTTCGCCACCC
CTCACACAATAGATGAACACGAAACCCTGGACTGCTACCTAATGGTGTAA
AGCACCGGCCTGCCCAACCCAACTCTCGACACACACCTACCATCAAGGCC
CCGCCCTCAGCTGTTCATTTTCATTACCATCATACCCTTCATACTCTATC
CGCAACGTGTTCATCGACCTTTGTAGGCAAGGCGGGGTTCATGCAGCTCT
TCTACGCTAGCCAATGCCCTGTTACCGGGGACCTGGACGGCGAGTACCGA
GCCCGCACGCTCAACATGGGCGTCTTGCACCCGATCACCGCTATCATCAC
GCACCGGATATGGGGGTGAGCCCCAAGCACCGGCTGCTGCCGTGTGAAAC
CTCGGAGGGTGTGGTCAGCGAGTGTGGTCTGCTTGCTATGTTGTCTGGTG
GTCTCACCTTCTCTGCATCACCTGTGCTCTCGTGCTCTCAAGGGCCGACA
TCACATTTTCAGGGTTGCATTGTGACAGCGAGGGTTGTTCACTTGCATGT
TCCGTTCCCGAGGCCGAATTGGGTTGCGCAAACAAATGTTACGAAGTGGG
GGCTAAGGGTTGAGAAATCGGTCTTAGGTCGGATCGACTTTGGTTGTAAC
TTGTCGCTGTAGAGAGAAGAAAGTAGGGGCGATACAGAGCTTGTACCCAT
CGACGAAGTGCGTGCGCAGATCCTGGTACAAGACGGGAGCGTAAATGTAG
CAACGTACCGAGTGGGCAGATCCCGACACATGCTTGTACGGTAATGACAA
GCACTACGTTTTTTTTTGCTGTATTTTGCCGGAGCGAATTCCACCGCCAC
CACCAACACGGAAGCCTTCCCTTCTTATGTACTGCTTGGTGTTCTCCTGC
TGCAGTCGTACCATTGGAGATAATGGTTCCATGGCAACCCATAACGCGCG
CCCACTGCATAATGTGCCCCCGCCATAAGGCCAGGGAGGTGGCTCGGGAA
GGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTCGCTTCCGAGT
CGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCGCTGCTTCCGG
TTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGTCTTCGGAGCT
CGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGCGGCATGCGGG
ACGAGGTAAAGCCTTGGCAGACAGAGCGATCGGCTCAAAAAGAGTGGTCG
TTATTGCAAGATTCGCATACAATCGGAGAGAGACTGCCCTTTCGAGGTCT
TACCACAGCGGTCGAAGGGGATGTGTTGAAGTTGTCAGTTTTTTTTTTGG
TACTCGAAAATGTCGATTTTGTTGTTTGGTGCTTACAACTTTTAGTTTTT
TGGTGCTCGAAAGCGGTCAATTCCGCAAATTTAGTGCTGGAGAGCGGTCG
ATGTTGTCTTTTGGTGCCGGCAAGTGGTCGATTTTGTATTTTGGTGCTCG
AAAGCGGTCGATTGTTTTTTGGTCGTCCGACAATACGAAGAAATCGGTGG
TGTATATGCACGAGACGTCTGGGGCAGTTAGGAAAGAGCGCCCCACGTAA
CACGAGTGTGTAGAGATGTCACCGACTGAAGCGAGTGGTGTTAGTTGGTC
TCGCCTTCGTTTTATTGGCGGAAAGATTTATCACCGGAACCTCCATTCAT
TCGGGTGGGGTTCCCCCCGGAATGCGGCGTGTTTCTGCTGAGCAAAGCTT
GAAACCACGGTACACAATTCTTTTTTTCTTACTAACAACGCATATGGCAG
ATCTAAATTCGTACAGCCCGTCCAGTTGCTGCATCGAAGGCGAGCCGCTA
GTGTCGCTCCTGGGGCTTTGTGGACATCTCGTCCGGACCAATACCAATCT
ACAGTAGCGCAATAACCTCGAAGAAACCTCTAAGCGCGCTGTTAAATCGG
ACGGCAAGCACCACAGCAGGGTGGGTAGGAGGCCTCAGGGAGCGGAAGCC
TTCTGTGTGACCACGGGTTGAACCTCTTACCCGGCAGAAATACTGTGTCC
GCAGATTAAATGTGATGAAAAAATCTATCAAAAGTTGCGCAACGAGGATC
AGCTCAAGGTCGCGTTTCTCACCTGTAGCCTGCTGCTTTCCCGTGCTCCG
CATCTCTCTTTCCAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG
GTCATGTGGCCTCAGCAACGGTCAGCGAGGGGCCACAGGAGGAAAGAGCG
TACACTCACC
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Coding sequence (CDS) from alignment at Scaffold_373:246747..250306-

>EsuBft446_5a-0001 ID=EsuBft446_5a-0001|Name=EsuBft446_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1050bp|location=Sequence derived from alignment at Scaffold_373:246747..250306- (Ectocarpus subulatus male Bft15b)
ATGATTGAACATGTGTTCGCGGACCCCCCGCCATATTCCAAAATGCCACA
CACTTCTGCCACGCTATGCAACATTCTCTCCCACACCTTTCAACCTCGAC
TCAAGCAAGGGAGCATGAAGCGCGCCTTCGTGCTTACCGTTGTGCCACTG
GTATCCAGCGCCTCCCTGGCAGCAGCGTTTGTCTGCCCTGCGCCCGCAAC
AGCAACATCTGCCGCCTTCACCCCGAACAGACCAAGATTAGCAGGTGACG
CATCATCATCATCTGCCTCCGCAACTATTGCGCCGCTTCGTCCCGCTCGC
GACCTACACCGCCAGCAACGGCAACGCGGGAGACATCTCGTCGCCTCCCT
GGGCGGAGGCGTCCCGGAAGTCGCGGCCGTCGTGATCTCATCGACCTCGT
ATGTTGTATCCTGGCTCGTCGGTACCCTCGTCGCAGCTTCAATCGCGAAT
TTCCTGCAGGGAAGACCGTACAGCGATCTGGGGCTAACACCAGACAAGAT
CCTGGGCGTTCCCGCTGAGGAGGCCACCGCTGATCACGTGGCCAGGCTAG
GCAAGGCGGGGTTCATGCAGCTCTTCTACGCTAGCCAATGCCCTGTTACC
GGGGACCTGGACGGCGAGTACCGAGCCCGCACGCTCAACATGGGCGTCTT
GCACCCGATCACCGCTATCATCACGCACCGGATATGGGGGCCAGGGAGGT
GGCTCGGGAAGGGCATCCGCACCGGCAGCCGGGAGGGCTACAACCTCTTC
GCTTCCGAGTCGAAGGGCATCGGACTTCCGAGCGACACGCAGCGAGAGCG
CTGCTTCCGGTTCTCCCAGTCCTCCGACAGCGTGTTCGATCGGGGAGTGT
CTTCGGAGCTCGACTACGCCAGAGCGGGCAAGAACGGGCCGCTGTTCGGC
GGCATGCGGGACGAGGTCCGAAAAGTGAACGACAAGCTTTTCATAGGTTT
GGGCTACATACAGGCCTTCGGTGGCAAGTACAACTCGGCTCCATTCGTCA
TGGAGGGGCCGCCCGTGGGCGAATTCTCCAGCCCCGATAAGAGCTTGTAG
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