EsuBft4327_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4327_2a-0001
Unique Name	EsuBft4327_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_544	contig	Scaffold_544:39342..40312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4538.ORGLA02G0045100.1
ProteomeId	EsuBft4327_2
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	971
Hectar predicted targeting category	other localisation
Evalue	9.65e-42
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4327_2a	EsuBft4327_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_544 39342..40312 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4327_2a-0001-exon	EsuBft4327_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 39342..40312 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4327_2a-0001-cds	EsuBft4327_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_544 39342..40157 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4327_2a-0001-exon	agat-five_prime_utr-10041	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_544 40158..40312 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4327_2a-0001	EsuBft4327_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_544 39342..40157 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:39342..40312-
coding sequence from alignment at Scaffold_544:39342..40312-

spliced messenger RNA

>EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=971bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGACCCACACGGCGAACGCC
GTCTGCTTTACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACA
TCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGG
TGGACTAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAA
ACACAAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGC
CTGGACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCG
AAAAATAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTA
CACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCG
AGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTG
ATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATT
TCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCA
ACACCCCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCC
GGAGTCACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTG
GGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACT
CAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCT
GATCTCTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGA
CAGATACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTG
GTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGG
GCNATCAGGGCTTTCGAATGA

protein sequence of EsuBft4327_2a-0001

>EsuBft4327_2 ID=EsuBft4327_2|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=271bp
MLGAWTSFGRTRVPGWTKADSLSPCGVCQIAKHKQSPHPKQSTRELSRPG
QLVVIDNMGPVNPPAKNKGGFFPYECKITDDYTKMKEVYLLRKKSDTTEA
VHTYNMCVAAAGGYLIETIRCDKGGEKTGSEFRDYCKNSAIKLEYAATNT
PQQSAVLERDGQSLAGVTRCLLKDGVFPPSMWGELMLTAAYLLNRSPHSA
LGGATPYSKLHKKSPDLSGLRVIGARTFVHHDRYRKKLDDRAFEGKLCGF
GLDSQTYRVLNPSNGAIRAFE

mRNA from alignment at Scaffold_544:39342..40312-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=971bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGACCCACACGGCGAACGCC
GTCTGCTTTACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACA
TCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGG
TGGACTAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAA
ACACAAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGC
CTGGACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCG
AAAAATAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTA
CACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCG
AGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTG
ATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATT
TCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCA
ACACCCCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCC
GGAGTCACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTG
GGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACT
CAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCT
GATCTCTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGA
CAGATACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTG
GTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGG
GCNATCAGGGCTTTCGAATGA

Coding sequence (CDS) from alignment at Scaffold_544:39342..40312-

>EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)
ATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGGTGGAC
TAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACA
AGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGA
CAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGAAAAA
TAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTACACGA
AGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCG
GTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTGATCGA
GACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATTTCGGG
ACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCAACACC
CCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCCGGAGT
CACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTGGGGGG
AGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACTCAGCA
CTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCTGATCT
CTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGACAGAT
ACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTC
GGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGGGCNAT
CAGGGCTTTCGAATGA