EsuBft4205_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4205_4a-0001
Unique NameEsuBft4205_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:136651..137317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4205_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_4aEsuBft4205_4aEctocarpus subulatus male Bft15bgeneScaffold_54 136651..137317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_4a-0001-exonEsuBft4205_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 136651..137317 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_4a-0001-exonagat-three_prime_utr-15456Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 136651..137011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_4a-0001-cdsEsuBft4205_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 137012..137317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_4a-0001EsuBft4205_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 137012..137317 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4205_4a-0001 ID=EsuBft4205_4a-0001|Name=EsuBft4205_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=667bp|location=Sequence derived from alignment at Scaffold_54:136651..137317- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCGAGGGGCAGCAGCGCC
AGGTCGTGGAGCAGGAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGGG
CCGGCGATGATGATCCTTCAACATCCAGTGCGCAGGAACGCTTCTTTGAA
GAAGTGAAGGACAAGATCGACCAGAGTATCACCCACGAGGGAGGTGGTGT
GAAAGGCCGGCTCCCGTGTGACAACCCGCTCGTGCGTCCGAAATGTGCCA
CTTTTCAGCCATCACCAGGTACGCCAGAGGAGTTTTTTTTTTTTGGGGGG
GGGTAAATAGCTGCCCATCTATCTTTATTTTCAGATTAAATCGTCCAGGG
AAAATACATCCCATCCCCCGGTAGGCTATTTTTTTTGTCTCGCGTGCCTG
ATGTTCTGACACATCTACCTCACATCTACGCGCGCCCAGACCTACCGAAA
CTCGACCGGTTTTATCAGAAGGCGGTATTGGTATGGATACCGGAGTTCTT
GTTCCCAGAGCTCCAGGCAGTTCCTTGTCCAGGATGTGGGGGCAAGGGCG
CACCTGATGGCTGGAACCCCAGGGGGCCACGCCGGGTGCACGACGTGGCG
TACGTGATGGGGTTTCGGTAAGTTCAGCATGCGAAGAAGAGTGTTCGCTC
GATAAACTTCATCAGTC
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protein sequence of EsuBft4205_4a-0001

>EsuBft4205_4 ID=EsuBft4205_4|Name=EsuBft4205_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MSGRGGGGGGGRGAAAPGRGAGGGGAGGAAGGGAGDDDPSTSSAQERFFE
EVKDKIDQSITHEGGGVKGRLPCDNPLVRPKCATFQPSPGTPEEFFFFGG
G
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mRNA from alignment at Scaffold_54:136651..137317-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4205_4a-0001 ID=EsuBft4205_4a-0001|Name=EsuBft4205_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=667bp|location=Sequence derived from alignment at Scaffold_54:136651..137317- (Ectocarpus subulatus male Bft15b)
ATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCGAGGGGCAGCAGCGCC
AGGTCGTGGAGCAGGAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGGG
CCGGCGATGATGATCCTTCAACATCCAGTGCGCAGGAACGCTTCTTTGAA
GAAGTGAAGGACAAGATCGACCAGAGTATCACCCACGAGGGAGGTGGTGT
GAAAGGCCGGCTCCCGTGTGACAACCCGCTCGTGCGTCCGAAATGTGCCA
CTTTTCAGCCATCACCAGGTACGCCAGAGGAGTTTTTTTTTTTTGGGGGG
GGGTAAATAGCTGCCCATCTATCTTTATTTTCAGATTAAATCGTCCAGGG
AAAATACATCCCATCCCCCGGTAGGCTATTTTTTTTGTCTCGCGTGCCTG
ATGTTCTGACACATCTACCTCACATCTACGCGCGCCCAGACCTACCGAAA
CTCGACCGGTTTTATCAGAAGGCGGTATTGGTATGGATACCGGAGTTCTT
GTTCCCAGAGCTCCAGGCAGTTCCTTGTCCAGGATGTGGGGGCAAGGGCG
CACCTGATGGCTGGAACCCCAGGGGGCCACGCCGGGTGCACGACGTGGCG
TACGTGATGGGGTTTCGGTAAGTTCAGCATGCGAAGAAGAGTGTTCGCTC
GATAAACTTCATCAGTC
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Coding sequence (CDS) from alignment at Scaffold_54:136651..137317-

>EsuBft4205_4a-0001 ID=EsuBft4205_4a-0001|Name=EsuBft4205_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_54:136651..137317- (Ectocarpus subulatus male Bft15b)
ATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCGAGGGGCAGCAGCGCC
AGGTCGTGGAGCAGGAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGGG
CCGGCGATGATGATCCTTCAACATCCAGTGCGCAGGAACGCTTCTTTGAA
GAAGTGAAGGACAAGATCGACCAGAGTATCACCCACGAGGGAGGTGGTGT
GAAAGGCCGGCTCCCGTGTGACAACCCGCTCGTGCGTCCGAAATGTGCCA
CTTTTCAGCCATCACCAGGTACGCCAGAGGAGTTTTTTTTTTTTGGGGGG
GGGTAA
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