EsuBft4205_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4205_2a-0001
Unique NameEsuBft4205_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:133361..134783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVB3
ProteomeIdEsuBft4205_2
Protein domainsIPR002562
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Notewerner syndrome atp-dependent helicase homolog os:mus musculus gn:wrn pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1109
Hectar predicted targeting categoryother localisation
Evalue1.28e-79
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Cross References
External references for this mRNA
DatabaseAccession
GO0006139
GO0003676
GO0008408
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2aEsuBft4205_2aEctocarpus subulatus male Bft15bgeneScaffold_54 133361..134783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2a-0001EsuBft4205_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 133942..134526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2a-0001-exonagat-exon-7838Ectocarpus subulatus male Bft15bexonScaffold_54 133361..134082 -
EsuBft4205_2a-0001-exonEsuBft4205_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 134221..134559 -
EsuBft4205_2a-0001-exonagat-exon-7837Ectocarpus subulatus male Bft15bexonScaffold_54 134736..134783 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2a-0001-exonagat-three_prime_utr-15454Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 133361..133941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2a-0001-cdsEsuBft4205_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 133942..134082 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_2a-0001-exonagat-five_prime_utr-9834Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 134527..134559 -
EsuBft4205_2a-0001-exonagat-five_prime_utr-9835Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 134736..134783 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1109bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTCCCGCTCCCCTGAAGGCTGTTCTCGAGGACCCCAGCATCATCAAGGC
TGGTGTTGCCATCAACACGGATGCCACGCATATGCTCAACGACTATGGCG
TGCAAATGGCGAGCACGGTGGACCTGCGTGTCCTTTCCGTTTCCAAGTTG
GTGGTGACATCGTCTCGAACACTCGCCGGCTTGACGGCGTGCCTCCTGGG
GAGGCAGCTGCCGAAGGATACCGTCCGATGCTCCCGTCGGGGAAGCGCTC
AACTCTCCGATGAACAGCGAGACTACGCCATCAGGGACGCCGTGGCCTCG
GCACTCTTGTACGAGGCCATCCACAAGAACAAGGACCCGATCACGTCCGT
GCCTTCTTCACCGTTCGACCCGGCTATCGGCTTGAAGGTGCGCCTCTACA
ACGCCAGCCATTCCGCCTGCGTGGCGGTCGGTCACGTGGTGTCCGATGCC
ACCGCGGAGGCCGCCCTTCGTCACTGGCAAAGTTCTGCCAAGCTACAAGG
TCTTTCCGGGAGCAGGCAACGGGCATGACGTGGTTGTAGGGGGCTCCGGG
GCAGGAGGTAACTCGGTAGAGGGGTCGCCGATCTTGGCTGGGCCTGGGGC
GGGGGCGGCGGGGGCGGCGCGGGCGGCGTTGCCGCAGTTCAGGGCCTGCA
CCGAATGCGGACACCACAAGGGTGCATACCCTGCTGAACACCCTGGGAAT
CGCCGTGGACATAAGGCGAAAGGTTCAGCGCCCCAGCCCAACGTTGAACC
GACAAAAAATGTTTAAAGGACCAGAGCTTGCGGCGTCCAGAGTCGGACAA
AGTCTGGAACCCTAAGCAAAGAAAGAGGACGTTTCTGCCCTGCCCGTGCG
ATGTATGCAAGGGCTCATACGCACACGTGGAGGATGGTGATAGTTAGCCT
GTACTGCCGGGTCGAGAAGGGCTGGACACATGTAAAAAAAAGTAAATATT
TGCCTACCGGTTCGAGAGGCCGTTCGGCTAGTTAAGAGTGCACTAGTTGG
ACGGTAGTCGCCCAGAATTCGGATGGTAAAGGAAACTAACAAACGGCCCA
CGATTGAGACATCAGATACATCACGGCTGCCCAGGCGATGTGTGCGTGTG
TGTGTGTTT
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protein sequence of EsuBft4205_2a-0001

>EsuBft4205_2 ID=EsuBft4205_2|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MLNDYGVQMASTVDLRVLSVSKLVVTSSRTLAGLTACLLGRQLPKDTVRC
SRRGSAQLSDEQRDYAIRDAVASALLYEAIHKNKDPITSVPSSPFDPAIG
LKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSAKLQGLSGSRQRA
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mRNA from alignment at Scaffold_54:133361..134783-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1423bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)
TTTCCCGCTCCCCTGAAGGCTGTTCTCGAGGACCCCAGCATCATCAAGGT
GAGACAACAGCAACAGCACATGCGCGTGAGGGTTGAATGCGATAGATGTT
GTGTTCCATGCAAGTACTGCTCTTGAAAGGTTGGTACGGCGTCTTTTAGC
ATCCGTCTTGTGAGCGTCTTCCTCGTGATACTATTTGAACGCCGACTCGG
CGACTCGATGTTCCCTCTGTGCAGGCTGGTGTTGCCATCAACACGGATGC
CACGCATATGCTCAACGACTATGGCGTGCAAATGGCGAGCACGGTGGACC
TGCGTGTCCTTTCCGTTTCCAAGTTGGTGGTGACATCGTCTCGAACACTC
GCCGGCTTGACGGCGTGCCTCCTGGGGAGGCAGCTGCCGAAGGATACCGT
CCGATGCTCCCGTCGGGGAAGCGCTCAACTCTCCGATGAACAGCGAGACT
ACGCCATCAGGGACGCCGTGGCCTCGGCACTCTTGTACGAGGCCATCCAC
AAGAACAAGGACCCGATCACGTCCGTGCCTTCTTCACCGTTCGACCCGGC
TATCGGCTTGAAGGTGAGCGCCTACGCATTGTGGTACCGGCCGTACTTCG
ATGTGGACCGACAACAACAGATCATGGCAGGTTCCAAATTTGTGCTGAAA
CCCAAGCAACAATGCTTGCCCTCGTTCTTTTGCCCTCTGCGCGTACTACA
GGTGCGCCTCTACAACGCCAGCCATTCCGCCTGCGTGGCGGTCGGTCACG
TGGTGTCCGATGCCACCGCGGAGGCCGCCCTTCGTCACTGGCAAAGTTCT
GCCAAGCTACAAGGTCTTTCCGGGAGCAGGCAACGGGCATGACGTGGTTG
TAGGGGGCTCCGGGGCAGGAGGTAACTCGGTAGAGGGGTCGCCGATCTTG
GCTGGGCCTGGGGCGGGGGCGGCGGGGGCGGCGCGGGCGGCGTTGCCGCA
GTTCAGGGCCTGCACCGAATGCGGACACCACAAGGGTGCATACCCTGCTG
AACACCCTGGGAATCGCCGTGGACATAAGGCGAAAGGTTCAGCGCCCCAG
CCCAACGTTGAACCGACAAAAAATGTTTAAAGGACCAGAGCTTGCGGCGT
CCAGAGTCGGACAAAGTCTGGAACCCTAAGCAAAGAAAGAGGACGTTTCT
GCCCTGCCCGTGCGATGTATGCAAGGGCTCATACGCACACGTGGAGGATG
GTGATAGTTAGCCTGTACTGCCGGGTCGAGAAGGGCTGGACACATGTAAA
AAAAAGTAAATATTTGCCTACCGGTTCGAGAGGCCGTTCGGCTAGTTAAG
AGTGCACTAGTTGGACGGTAGTCGCCCAGAATTCGGATGGTAAAGGAAAC
TAACAAACGGCCCACGATTGAGACATCAGATACATCACGGCTGCCCAGGC
GATGTGTGCGTGTGTGTGTGTTT
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Coding sequence (CDS) from alignment at Scaffold_54:133361..134783-

>EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)
ATGCTCAACGACTATGGCGTGCAAATGGCGAGCACGGTGGACCTGCGTGT
CCTTTCCGTTTCCAAGTTGGTGGTGACATCGTCTCGAACACTCGCCGGCT
TGACGGCGTGCCTCCTGGGGAGGCAGCTGCCGAAGGATACCGTCCGATGC
TCCCGTCGGGGAAGCGCTCAACTCTCCGATGAACAGCGAGACTACGCCAT
CAGGGACGCCGTGGCCTCGGCACTCTTGTACGAGGCCATCCACAAGAACA
AGGACCCGATCACGTCCGTGCCTTCTTCACCGTTCGACCCGGCTATCGGC
TTGAAGGTGCGCCTCTACAACGCCAGCCATTCCGCCTGCGTGGCGGTCGG
TCACGTGGTGTCCGATGCCACCGCGGAGGCCGCCCTTCGTCACTGGCAAA
GTTCTGCCAAGCTACAAGGTCTTTCCGGGAGCAGGCAACGGGCATGA
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