Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LFA1 |
| ProteomeId | EsuBft419_13 |
| Protein domains | PF12783 |
| Protein domains | PTHR10663 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | brefeldin a-inhibited guanine nucleotide-exchange protein 1 os:homo sapiens gn:arfgef1 pe:1 sv: [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1446 |
| Evalue | 3.32e-134 |
| EggNOG OGs | COG5307@1|root,KOG0929@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K18442 |
| KEGG Pathway | ko04144,map04144 |
| Description | regulation of ARF protein signal transduction |
| COG category | K |
| BRITE | ko00000,ko00001,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0032279 |
| GO | 0034237 |
| GO | 0034259 |
| GO | 0030837 |
| GO | 0005086 |
| GO | 0055037 |
| GO | 0030532 |
| GO | 0048471 |
| GO | 0001881 |
| GO | 0006887 |
| GO | 0005802 |
| GO | 0000139 |
| GO | 0005829 |
| GO | 0007032 |
| GO | 0007030 |
| GO | 0008060 |
| GO | 0043547 |
| GO | 0050811 |
| GO | 2000114 |
| GO | 0031410 |
| GO | 0043197 |
| GO | 0032760 |
| GO | 0005730 |
| GO | 0005879 |
| GO | 0005815 |
| GO | 0006893 |
| GO | 0090284 |
| GO | 0017022 |
| GO | 0032280 |
| GO | 0090303 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1446bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGGTGCAGCGGGA
CGCTTTGATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGC
GGACGCTGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCCAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGA
GGCCCCTGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGCTTAC
AAAATTTCTGCCCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTT
TTTTTTTGGGTGGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACG
CGCCAACCCAACCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGA
CGGCGGCGCTAGAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCT
AGGTTCCGCGCTCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTG
CGCGGCGCTGCTCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCC
TCAGCCTACGGGTGTTCGTTGCGCTGATCAAGGGGTTCAAGGACCATCTG
AAGGCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGA
GAGCGAGCACTCGGCGTTCGATCACAAGATGCTTGTTTTGGAAGTCATCT
CCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTCAACTAC
GACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCACAGCTTT
AGTCAAGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCA
AGAAGGACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGC
GCGGTGGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTT
GTACGGGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA back to topprotein sequence of EsuBft419_13a-0001 >EsuBft419_13 ID=EsuBft419_13|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=481bp
MTFSRLEMESPPPSIHGGQGQHASPSPKKRRTSAIEALLSPARRSELSPA
AAVEEEEAAKPSSETQSEDDDDGGVGGDGSDDPRNRLGGVLPGVLEVLAG
EDEGQEEPEQSEGGEGGERARLDEVSLAGGEGGRRKGREVGAGRRGGGSP
RLRVEGENVELTVVQRDALMLLSELCDWSLVDERTLSEELGGSGGGGGGG
GGQGDDDERPGDEVGAEAPGARDXESDTGKQGLQNFCPPRVSPYHHRPRV
FFWVGGSANTTAANAERANPTAIFSRAYVCKHKTAALELIVSVLQTYGGP
RFRALPAAATLVRGELCAALLHHCTSNVTGVVSLSLRVFVALIKGFKDHL
KAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLALVEMFVNY
DCDLQAIDLFKRIATALVKVAKGRAGSEGASASKKDLEQDRSLQLMGMGG
AVAMVSSMVKAADLEELYGDMAMVPRRGSAR back to topmRNA from alignment at Scaffold_360:91780..95720+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3941bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGAGAATTCAAGA
GATGGGACAAGATGGGAGACAAGATCGAAGGAATGAGGGAGGTTCTTTAT
CTCGGCGCACGTTCTTGACCGTCCAACTGTTCGTTGACGATTTTTTTTCG
TTCGGTCATTTGTCGACGGTACTTTTTTCCGAACGGCGTGTCTGCCTACA
TGCTGCCAAAAGAGATGTGCATATGTCCACGAACAAACTAAGGCCCACTC
CCGGTCCAGCAACACTACTGGCGAGGGCCGCCACTCGACGAGCGTGTCGA
ATCAAGCGAACACTTCCAACTATTTACGTACTTCGGGTCTCTCAGAATGC
GTCACCCCCAACTCCCCCACGCTCCGTCCGCGCTGTTTTTTTTTTTTCCT
GTTTCTCTCGGGTTTATCACCCATTCGCTGCTGTTTGCCGCGACAACGTG
CGTGGAAGAAACGAAAAGACAACACGTGGTCTCGCCCCTGTTTCTTCTCC
TCGCGAAAACTCGACGCTGACAAACCTCAGGTGGTGCAGCGGGACGCTTT
GATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGCGGACGC
TGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
CAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGAGGCCCC
TGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGTAGACCTTTGT
TGTTGTGTTTTTATTTTTTTCGTTACAGGGAGTCACGGGAAGGATATACA
TAACTGCAAGCATTCTTGCGCATAGTTTCGGTTCGTTGTTGCGCTCGCCA
CGGTTCACGCTCGGAGGCTTACATAGCCTGTTGTCTTAGCTTCCTCTCTC
TCTCTCTCTTCAGCGCTCTTTCGTCGGTTATCTTCTCCCTCCCACCCCTG
GCCTGTTTTCTTTTTTCTCCTTTTGCCAAAAAGGCTTACAAAATTTCTGC
CCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTTTTTTTTTGGGT
GGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACGCGCCAACCCAA
CCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGACGGCGGCGCTA
GAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCTAGGTTCCGCGC
TCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTGCGCGGCGCTGC
TCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCCTCAGCCTACGG
GTGTTCGTTGCGCTGATCAAGGGGTTCAAGGTGCGACAACGGGCCGTTCA
AAGGCGATTATGGTCCCAGAGAAGTAGACAGGGGGGGGTTCGCGGGCGCA
TCAGTTGTAGTCATATTAGTCTTTGCAGGGATTTTCGTATTATGTAAACA
TGGATGAAGCATGCAATTGGGGAAGTTGTGTTAGGGTTACAAGAGGGTTA
GGGGATAGGGTCTGCGTCCCCCCCTCCCTGGTCCATCATCCTCGTATACT
TATCAATCGCGCGCAGGTGATCCGTTCTAGTGTATCGGCGGGGGGGGGGG
GGNGGGGGACTCTTCTTCGTCGATGGAGTATCCGGACCATAGGGTCCCTG
TCGTGGCACAAGCTGGGGTTTGATTCACCGAGGAAGGGGTGACGTCTTGC
TTGTTCTTTTGTGTATCGGCGAGGGATTGGGGTACGAGAGGATAGCATCG
CGGGATGCGGAGGCGTCGTCAGAATGGAGAGGGCGACGGACAACGGAGGG
TTATTGCTGGGGGGGATTTCGTAGTGTGTGATCCGAAGTTTTAGCATGAT
GTGCGCCATCCTCTGTGTAGGATGCTTTGGACGATAAAAGGCGTGCACGC
GTGTGTTGTGCTGCAGTGTGTGGTGAGGTGCAAACGTTCGCAGGACAGGC
AGGCACAACAGCGGAGCAAGAACGCTGCAGAGGGTGCTGCGGCAGAAACA
TGCCCGTAGCACCGAAGACAAGCTTTTGTCACACGCGTTGACAACACCCG
CTGTTTTGTACTCATTGCCTTTTCACGCTCTTAGTTGTTTTGCGCACCCG
TTGCCAACTCTTTTGACGTGTAAGATTGATCACGATTTGTTCTCTGCTGT
TTGTGTTGTTTTTTTCGCTTCTGCTATCACTGCTGCGGCGCCCCCCCCTT
GTACGTTTTTTTTTGGGGGGGGGGTCGTGGAATTCCAGGACCATCTGAAG
GCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGAGAG
CGAGCACTCGGCGTTCGATCACAAGGTTTGCGCAAATTCAGGAGCTGTCT
ATGAACGGGTGCCACGAAATTTCACACATTTCATTCGTTGATTTCCACGA
ACCACGGGTACGACTCTGGTTCGGGGGGGGAAGCGAGGGATTTCGTATGT
TGTGGTGGTTTTATTCCCTTTGGCGTCTTTCCAAATGTGTTTTGATGCTT
ACACGGTGGTGCCGTCGCAGCCTTTTCTGCTGCTGGTGGTGCCCTGCTCT
TTGAGATGATTTGGTCCCTCACGCGTCTCTCTCCCTCGTCCCTTCCCTTT
CTCCTGTCCCCTCTGCTTGTCTGTGCGGGGACTTTGCCTGCCATCCAAAC
CAACACTACCAACGTCGTCGACGACAACAACCAGATGCTTGTTTTGGAAG
TCATCTCCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTC
AACTACGACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCAC
AGCTTTAGTCAAGGTGTGTGTGTGTGAGGGGGGGGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGAGGGGGTAGGGGGGGGGGGAAGTCG
TGACCGACAAGCCGGAGGCGTCGCCCCCCTTCTTGGCGGGGGTTTGCATC
TTTCTCCTGACTCCTCAACTAGTCAATAACTCCTTCTCGCGGTCTCAGGC
GTCTTCTGTGCTACAGTCTGTCAGATTGGTGTACAACTGGGAAGCAATAG
TAGAGTGCTGATCCGTTTTGCATCGACGGCTCCCCAACCTCGCTCACAGA
AGCTTAAGCTTCCCTCAGCGTTTCCAGCACCGCTTGAAAGTGATTCCCAA
AGGCCTACATTACGACACACCATTTGTTCGCCGTGCGGACCTGATTGTGT
TTCTTCTTTGCAGCCACTTCCCTTCAGTATGGGTTGGCATGTTCCTACGT
AGCTTTCTCTCCGTCAATCTCTTCATTTTGGCCCCCCGTCCGTTTGTCAC
AGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCAAGAAG
GACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGCGCGGT
GGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTTGTACG
GGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_360:91780..95720+ >EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1446bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGGTGCAGCGGGA
CGCTTTGATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGC
GGACGCTGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCCAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGA
GGCCCCTGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGCTTAC
AAAATTTCTGCCCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTT
TTTTTTTGGGTGGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACG
CGCCAACCCAACCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGA
CGGCGGCGCTAGAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCT
AGGTTCCGCGCTCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTG
CGCGGCGCTGCTCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCC
TCAGCCTACGGGTGTTCGTTGCGCTGATCAAGGGGTTCAAGGACCATCTG
AAGGCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGA
GAGCGAGCACTCGGCGTTCGATCACAAGATGCTTGTTTTGGAAGTCATCT
CCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTCAACTAC
GACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCACAGCTTT
AGTCAAGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCA
AGAAGGACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGC
GCGGTGGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTT
GTACGGGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA back to top
|