EsuBft414_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft414_14a-0001
Unique Name	EsuBft414_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1545101..1550684 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft414_14
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	75
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-27_002450.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a	EsuBft414_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1545101..1550684 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a-0001	EsuBft414_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1545217..1550593 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a-0001-exon	EsuBft414_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1545101..1545393 -
EsuBft414_14a-0001-exon	agat-exon-23486	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1546626..1546918 -
EsuBft414_14a-0001-exon	agat-exon-23485	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1546974..1546995 -
EsuBft414_14a-0001-exon	agat-exon-23487	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1550537..1550684 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a-0001-exon	agat-three_prime_utr-15310	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 1545101..1545216 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a-0001-cds	EsuBft414_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1545217..1545393 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft414_14a-0001-exon	agat-five_prime_utr-9752	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 1550594..1550684 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1545101..1550684-
coding sequence from alignment at Scaffold_523:1545101..1550684-

spliced messenger RNA

>EsuBft414_14a-0001 ID=EsuBft414_14a-0001|Name=EsuBft414_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_523:1545101..1550684- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGCACCCGCCCATTCCTTCCCATTTTTTTTCCGGCGGGGGGCAAAGTTG
GGAGCCTGCGCGTGGTTTTTCCGTGATCGTCAGGCTTCATCATGAAGCCC
CGATCGGTGACCGGTGGGCGACTCGACAAACACATCCAGGAAGGAAAGGC
AGCACCGCAAAACCGGGCAGCGGCGAAGGGCTTCGACTCGGACGATGACG
ACGACAACGACAAGAAGCCGGCGGCCGCCGCCGCCGCCGCCGCCGCCCCT
GTCCCCGCCCTTGCTCCGGTGGCCTTGGTGCCGCCGCCGCAACCGTACAT
GCAGCAGCCCCAGTACGGGATATCGCCGGTGCCCCAGCAGTACTACGGCC
ACTCGCCGGTGCCGTATGGGGTGTCGCCGGTGGCCATGTACCCGGCAGCG
CCCTGGAGCGCTATGCCGGCGTCGCCCGTGCCGGTCCAGGTGCCGGAGTA
CATCAAGCGGCAGCACGCCGAGGCCCTCAAGGCGAAGAAGAAGAAGGAGG
AGGAGGAGAAGAAAAAGAAGGAGGCCGAAAAGAAGAAGATCGCCGCGGGA
GCGTGGGAGAAGTTGTACACCAGGGACGGCGGGAAGTTCTGGCAGCACTC
GGTCACCGGAGAGATCTCCAAGACCGACCCCTACTACTGACGCCGCCGTC
GGCGCTGAAGCGGTCCCGTGAATGCGGGAGGGGGGCGGGGGGGCTGCCTC
GGTGAGGCGGCAAGTGGGCTGGCCGCCTTGCTGATAAATTGCGGCGGCGG
CGGCGG

protein sequence of EsuBft414_14a-0001

>EsuBft414_14 ID=EsuBft414_14|Name=EsuBft414_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MKPRSVTGGRLDKHIQEGKAAPQNRAAAKGFDSDDDDDNDKKPAAAAAAA
AAPVPALAPVALVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMY
PAAPWSAMPASPVPVQVPEYIKRQHAEALKAKKKKEEEEKKKKEAEKKKI
AAGAWEKLYTRDGGKFWQHSVTGEISKTDPYY

mRNA from alignment at Scaffold_523:1545101..1550684-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft414_14a-0001 ID=EsuBft414_14a-0001|Name=EsuBft414_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5584bp|location=Sequence derived from alignment at Scaffold_523:1545101..1550684- (Ectocarpus subulatus male Bft15b)
TCGCACCCGCCCATTCCTTCCCATTTTTTTTCCGGCGGGGGGCAAAGTTG
GGAGCCTGCGCGTGGTTTTTCCGTGATCGTCAGGCTTCATCATGAAGCCC
CGATCGGTGACCGGTGGGCGACTCGACAAACACATCCAGGAAGGAAAGGT
GCCCTCAGCGACTGCGGAACACGTAAAAGTAACCCCCTTCTGTTCTTTCA
TGGCCACGAGGCACCAGCTACCGCACACCATTATCTTTACCCTCCTCTCC
AAGACCAGGCGGCACAGCAGCAGTAATGCCTGCTTGCGTGGTATCTCCCC
AAGAAAATAACGGCAGTTTGTACGTAGACGTGAAGAAGATCAAGAGTGTG
TTTAGTACAGTACAGCAGTACCTTCATGCCAGCATTGAAGTCCGTACTGT
AGCAGCCAGTACAGTACAGTTCTGAGGGCCGTGTTGTCAGTACAGTACAT
TCCAGTATCGAGAGCTGTACTAAAAGTACTGAAACTTGTATTCCAGTATC
GAGAGCTGAACTAAAACAGCCAGTACATTCCAGTATCAAGAGCCGTACTG
AGGGTGCAGTTTATTCCAGTACCGCGAGCTGTACTAAAAGTACTGAAACT
TTTTATTCCAGTATCGAGAGCTGTATTAAAACAGCCAGCACATTCCAGTA
TGCCTCGCAGGTATTGAATACTGTGCAGTACCGCCAGTACCAAGCGCTGT
ACTGAAGCGTGCAGTGTTGCGCAGTATTACGCCAGTACAGGATGGAGAGC
AGACCTCCACCAGAGCTCGTACTGAGCGTACTGGTTGGTTGAGCGGAGTA
TCGAGAGCCGTACTATAATAATAGTGACAATATATACTACAGTGGTAGGG
TTAAGAGAGACTGCTGTCTTGGTCAGTAGGGATAGCACAGATGCACAGAT
GCATATGCATGAAGCACCGAAGCAGTACTAGCACTACCACTTCTCCACGT
GCACTTCGCACTTCTCCGCCCTCTGGGAAATCCTAATCCTAATCCTAATC
CTATCTACGCTGCTTTGAAACCCCCCCCCTCCCCGCCTCCCCCCTCCCGG
TGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGATGTAAAA
CAAGCCGTCCCCCCTCGGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTT
GGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCGAGTACCAGTAGTCAAGTTCGGTAGTACACTGGA
CACGGCAGTACGACGTAGTCGTGTACTTGCAGCAGGAGTGGGACTGTAGG
ACTAGACGAATTGGACGAGGCTGTGCCGCATTAAGATGACGTCACCAACA
CGCCCTTCGGTGGATTTCGGGTGGATACCGGGTAGATACGGGCAGTCGTA
CGACCCCTACCGTCCAGTATCGACACCCGAACTAATGCGTGCAGTACGTT
TATTCCAGTATTGAAGTCCGTACTAAAGCAGCCAGTACAGCAGTACAGTA
TCGAAAGCTGTACTCAAAAGTACCGAAACTAATATTCCAGTATCGAGAGC
TGTACTAAAAATACTGAAACTTTATTCCAGTATCGAGAGCTGTACCAAAA
GTACTGAAACTTTTGTTCCAGTATCGAGAGCTGTACTAAAACAGCCAGTA
CATTCCAGTATGCCTCGCAGGTACTGAATACTGTGCAGTACCCCCAGTAC
TATACTGTACTAAACACACCCGTGAAGAAGATCGCGAGACATGATCTACG
TGTGGTCGTATGGACAGACCAAAGAGAGCAGAGAGCACGGAGCTCTTCAA
TATTTTGACCGAAAGGCAGTGGATGGAGAAGCGATAGATGCGAGAGATAA
GGTGAATGCCGAAGTTTTCAAGCACGATCAAATATCGATGTGAGATGTTT
ATTTTAACTTGCAGTTATGGCGCATGTACCGTCCATCGTTTCACGCACAC
ACCCGACCCCGCAGCTTTCATTTTTTGATCGCCTCACGTCTGTCTCGGGT
GCTAGTCATTTACCAAACTGGGTTTTGCCCTCAACGTTCCGCGTGTTTGC
CGTACGGCCTTTCTGCCTAGTTTCAACGAGCGTGCGACGTGGGGATCGTG
GCCGGTTCACACACAACGGAGGGCCTTCTCTCTTTTGTCTCCCCGAGGCA
CGCCCAACCATTGCTTCTCAGCTGTGCTGACTCGCGCCGTTGTTGCACGC
CTGTGTCCTCTACCCCCCCCTCCCTGTCCTACCCTTCCATCCATGCCCGA
ATCGTGGCACTCGAGACTCGTACACCCTACCGACGAGAGCGCCCGAACTT
CAACGCTATGTATACTAAACGTTTGCATACTACATCCAGACTACTCAGAA
ACTATTTGTGGACGCGTGTAGACAGTGATTGTTCCAACAACGACTACGAC
TACTGAGAGCGCGTTTTGGAGGTCAGCCTTTGCGACGAGAACGGTACATG
GGTCAAAAATTCTGAAACGCGAGCCAGAAGAACAAGACGTTCGCTTTCAA
CAACCGTCATCAGACGACTCTCCTTTCCCCCTCCTCGATACGAAAGTCGC
TAACCCCCCCCCCCCACCCACCCCTCGAATCATCAACAGGCAGCACCGCA
AAACCGGGCAGGTTACATACGGCACCAGCTACGCCCTCCACCAGCAGGGC
TACAACACCGGCCTAGCGGCGAAGGGCTTCGACTCGGACGATGACGACGA
CAACGACAAGAAGCCGGCGGCCGCCGCCGCCGCCGCCGCCGCCCCTGTCC
CCGCCCTTGCTCCGGTGGCCTTGGTGCCGCCGCCGCAACCGTACATGCAG
CAGCCCCAGTACGGGATATCGCCGGTGCCCCAGCAGTACTACGGCCACTC
GCCGGTGCCGTATGGGGTGTCGCCGGTGGCCATGTACCCGGCAGCGCCCT
GGAGCGCTATGCCGGCGTCGCCCGTGCCGGTCCAGGTGCCGGAGTACATC
AAGCGGCAGGTGAGAAAGAGAGAGCGCGCGGGGGGCAGCAGTCTACGCCG
CAAAATCGATTGAGCAAACTAATGGGATAAAGTATTCAATCTGTGCTTGA
GGATTCTCTCTGTCTCTCTCTCCCTCTCTCTCTCTCTCTCTTTCTCATTC
AGTAGCAGGCTATGTAGTTCGTCTTTAGTGAATATGTTGGATGAAGGATG
CAGTTGGGGAGTTGAGTTAGGGTCTGGGGTCTGCGCACCCTTTCCATGTG
CTATTTATTTGAGCAGTAACCAGAAACGGGTATTCCCAGGTGAAATATCA
CCATTTCAGGGTACACTTTGAAATCAACACGCCACCAATTTCCGACAGCA
TCCGCCGTAGATCGTGGCGAAACCAATAAGCCGATGTCTGTGTCCTGTGT
CCTGTGTCCTGTGCCTCGGAAGCACGAGGCAGGTCGTGCCCGTTTTTCTC
TGTCTCTGTGCCTCTCTCTCTCTCCGACCTTTCACTTACCACCCCTCTGT
TGAGAAGGGCCGGTATCCTAAGGAGGCGGTGCCCATGAACGATGAACGAG
CGAGTTTTGTTGGTGGTTTGGTTGTGGTTATTCATGTGCGGTACACGGTA
TGTGCGGTACACGGTTTTTTCTGCGGGTTTTATGCTAGAGCGTCGGGCGC
CTAGATTATAAGACTATTTCTGGGTACAAAATCGACCTCTTCCGGGCACA
CCAGTAACCAATATCGGTCACACCAGAGGGTCCTAGTTCCAGCGGAAGTT
GTACCCGATGGAGGTTTCTTCAGAAATGGGCACAATGGTTTTTCGGCCAA
TCAGCTGACAGCCTGTGGGTGTACCCTAAAGTGGTGATAGAGTATCCGGG
TGTACCCGTTTCTGGTTATTGGTCTATTTATTTCCTCTCTATAAATATAC
ATGAACACAAATTCTCACGAAGGCGGTCCCTCTCTTTCTCTGTCCTCCGG
AGTATTTTTTTCTCACCCTCCCTTCTCGCTCCCCCTCCCCCCCTCCCTAT
CCCTGACCCGTACCCTAACCCTAAAGCACGGATTGAATACTTTATCTTTG
CTTAATCAATTTTGCTGCGTAGACTACTGTCCCTTTTTTTCTTCTGTGTG
TCTCCTCCAATTCTTGTGTCACTCAAACGTGCTTTTTTCAAACCCGTTTA
CTAGAGCAGCGCCCGGTTGTTCACGCAAACCAAACACGTCGCTTTGGCCT
GCGTTGTCTCGTCTCGCCAAAAATAAAAAAATACTCCGCAGCACGCCGAG
GCCCTCAAGGCGAAGAAGAAGAAGGAGGAGGAGGAGAAGAAAAAGAAGGA
GGCCGAAAAGAAGAAGATCGCCGCGGGAGCGTGGGAGAAGTTGTACACCA
GGGACGGCGGGAAGTTCTGGCAGCACTCGGTCACCGGAGAGATCTCCAAG
ACCGACCCCTACTACTGACGCCGCCGTCGGCGCTGAAGCGGTCCCGTGAA
TGCGGGAGGGGGGCGGGGGGGCTGCCTCGGTGAGGCGGCAAGTGGGCTGG
CCGCCTTGCTGATAAATTGCGGCGGCGGCGGCGG

Coding sequence (CDS) from alignment at Scaffold_523:1545101..1550684-

>EsuBft414_14a-0001 ID=EsuBft414_14a-0001|Name=EsuBft414_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_523:1545101..1550684- (Ectocarpus subulatus male Bft15b)
ATGAAGCCCCGATCGGTGACCGGTGGGCGACTCGACAAACACATCCAGGA
AGGAAAGGCAGCACCGCAAAACCGGGCAGCGGCGAAGGGCTTCGACTCGG
ACGATGACGACGACAACGACAAGAAGCCGGCGGCCGCCGCCGCCGCCGCC
GCCGCCCCTGTCCCCGCCCTTGCTCCGGTGGCCTTGGTGCCGCCGCCGCA
ACCGTACATGCAGCAGCCCCAGTACGGGATATCGCCGGTGCCCCAGCAGT
ACTACGGCCACTCGCCGGTGCCGTATGGGGTGTCGCCGGTGGCCATGTAC
CCGGCAGCGCCCTGGAGCGCTATGCCGGCGTCGCCCGTGCCGGTCCAGGT
GCCGGAGTACATCAAGCGGCAGCACGCCGAGGCCCTCAAGGCGAAGAAGA
AGAAGGAGGAGGAGGAGAAGAAAAAGAAGGAGGCCGAAAAGAAGAAGATC
GCCGCGGGAGCGTGGGAGAAGTTGTACACCAGGGACGGCGGGAAGTTCTG
GCAGCACTCGGTCACCGGAGAGATCTCCAAGACCGACCCCTACTACTGA