Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FP33 |
| ProteomeId | EsuBft4144_2 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 34 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 1.56e-16 |
| EggNOG OGs | COG5021@1|root,KOG0940@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ubiquitin protein ligase activity |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=342bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTAGACAATGAC
AAGTTCCAGTGTGATTGCGGCTCCGAGTGCGAAGACCGGGTTCATGTAGT
TGCAGAATGTCCGCCGTTGTACAAGAAAGAGAGGGACCTGTACATGACTG
AGCTGGGAAAAGTAGAAGGAACATTCAGGGAGATATTTGAGGCATGGAAC
AGCCAGGAGAAGACGGTAGCCGTAATGGGGCATAGCAAGTAG back to topprotein sequence of EsuBft4144_2a-0001 >EsuBft4144_2 ID=EsuBft4144_2|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MVVKEHRRKATIIWTGLLVGFLAYVGYIIWETIESRKDPASSIELKVDND
KFQCDCGSECEDRVHVVAECPPLYKKERDLYMTELGKVEGTFREIFEAWN
SQEKTVAVMGHSK back to topmRNA from alignment at Scaffold_265:69274..69743+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=470bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTACGATGGACC
ACCTCACATGCGCTCCACCCCCTCCCGTACCACCAATGGATGCAGGGACA
AAGCTGAAGGTCAAATGTAAAGCCGGGGGACATTGGCCCCCAGAACATTG
ACGAAGATTTTGGAAGGTAGACAATGACAAGTTCCAGTGTGATTGCGGCT
CCGAGTGCGAAGACCGGGTTCATGTAGTTGCAGAATGTCCGCCGTTGTAC
AAGAAAGAGAGGGACCTGTACATGACTGAGCTGGGAAAAGTAGAAGGAAC
ATTCAGGGAGATATTTGAGGCATGGAACAGCCAGGAGAAGACGGTAGCCG
TAATGGGGCATAGCAAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_265:69274..69743+ >EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTAGACAATGAC
AAGTTCCAGTGTGATTGCGGCTCCGAGTGCGAAGACCGGGTTCATGTAGT
TGCAGAATGTCCGCCGTTGTACAAGAAAGAGAGGGACCTGTACATGACTG
AGCTGGGAAAAGTAGAAGGAACATTCAGGGAGATATTTGAGGCATGGAAC
AGCCAGGAGAAGACGGTAGCCGTAATGGGGCATAGCAAGTAG back to top
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