EsuBft4144_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4144_2a-0001
Unique NameEsuBft4144_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:69274..69743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP33
ProteomeIdEsuBft4144_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length34
Hectar predicted targeting categorysignal anchor
Evalue1.56e-16
EggNOG OGsCOG5021@1|root,KOG0940@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionubiquitin protein ligase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4144_2aEsuBft4144_2aEctocarpus subulatus male Bft15bgeneScaffold_265 69274..69743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4144_2a-0001-exonEsuBft4144_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 69274..69411 +
EsuBft4144_2a-0001-exonagat-exon-96721Ectocarpus subulatus male Bft15bexonScaffold_265 69540..69743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4144_2a-0001-cdsEsuBft4144_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 69274..69411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4144_2a-0001EsuBft4144_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 69274..69743 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=342bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTAGACAATGAC
AAGTTCCAGTGTGATTGCGGCTCCGAGTGCGAAGACCGGGTTCATGTAGT
TGCAGAATGTCCGCCGTTGTACAAGAAAGAGAGGGACCTGTACATGACTG
AGCTGGGAAAAGTAGAAGGAACATTCAGGGAGATATTTGAGGCATGGAAC
AGCCAGGAGAAGACGGTAGCCGTAATGGGGCATAGCAAGTAG
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protein sequence of EsuBft4144_2a-0001

>EsuBft4144_2 ID=EsuBft4144_2|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MVVKEHRRKATIIWTGLLVGFLAYVGYIIWETIESRKDPASSIELKVDND
KFQCDCGSECEDRVHVVAECPPLYKKERDLYMTELGKVEGTFREIFEAWN
SQEKTVAVMGHSK
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mRNA from alignment at Scaffold_265:69274..69743+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=470bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTACGATGGACC
ACCTCACATGCGCTCCACCCCCTCCCGTACCACCAATGGATGCAGGGACA
AAGCTGAAGGTCAAATGTAAAGCCGGGGGACATTGGCCCCCAGAACATTG
ACGAAGATTTTGGAAGGTAGACAATGACAAGTTCCAGTGTGATTGCGGCT
CCGAGTGCGAAGACCGGGTTCATGTAGTTGCAGAATGTCCGCCGTTGTAC
AAGAAAGAGAGGGACCTGTACATGACTGAGCTGGGAAAAGTAGAAGGAAC
ATTCAGGGAGATATTTGAGGCATGGAACAGCCAGGAGAAGACGGTAGCCG
TAATGGGGCATAGCAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_265:69274..69743+

>EsuBft4144_2a-0001 ID=EsuBft4144_2a-0001|Name=EsuBft4144_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_265:69274..69743+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCAAGGAGCACCGCCGGAAGGCCACGATCATCTGGACAGGCCT
CCTGGTGGGCTTCCTAGCTTACGTTGGGTACATCATATGGGAGACTATTG
AATCTCGAAAGGACCCCGCTTCGAGCATCGAGCTCAAGGTAGACAATGAC
AAGTTCCAGTGTGATTGCGGCTCCGAGTGCGAAGACCGGGTTCATGTAGT
TGCAGAATGTCCGCCGTTGTACAAGAAAGAGAGGGACCTGTACATGACTG
AGCTGGGAAAAGTAGAAGGAACATTCAGGGAGATATTTGAGGCATGGAAC
AGCCAGGAGAAGACGGTAGCCGTAATGGGGCATAGCAAGTAG
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