EsuBft3745_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3745_3a-0001
Unique Name	EsuBft3745_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:180555..181782 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3745_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	99
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3745_3a	EsuBft3745_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 180555..181782 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3745_3a-0001-exon	EsuBft3745_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 180555..181182 -
EsuBft3745_3a-0001-exon	agat-exon-33107	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 181412..181782 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3745_3a-0001-cds	EsuBft3745_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 180555..181182 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3745_3a-0001	EsuBft3745_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 180555..181782 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:180555..181782-
coding sequence from alignment at Scaffold_265:180555..181782-

spliced messenger RNA

>EsuBft3745_3a-0001 ID=EsuBft3745_3a-0001|Name=EsuBft3745_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=999bp|location=Sequence derived from alignment at Scaffold_265:180555..181782- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTCGACCAAGAGAGGGTCTACTGCCTGCAGCAGTTGGTTCATGA
CGGATACACGCTGCGCGACAAGCTCAGCATCCAGCGACAGAAGCCACGAA
AGGATCGGTTAGTGCTGCACTCAAGGTCGCGAGCCAACAATACTGAGTTG
AAATGGCGGCGCCGCTGGATCACGTCTGGGAAGCCACGCGGCCGCGACGC
CGTCGCGGAGGGAATCATCATAGACGAGGTGACTGCTGCTGACTGGGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAACAG
CACCCGCAGTTCGAGCCGCAGCGCCAGCCGTTGGTTCACTTCAAGAACTC
CGGTCTCGCAGGAGGATACAAGTTTTTGCTGGAGCTCGACGAAGGCGTCT
TCAAGCTCGCGAAAGGCTGGGTGCTCGAGAACTGCGGGATACTCAGTGGG
CAAGCCAATAAAACGGTGGAGGATTTCCGCAAGTGGGTGAACAGCACCAT
CATGCCGATGCTGGAGGAGCAGGAAAAGGACGGCATCAACGCTTTCCATG
GATTGAAAGTAAAGCTGGTGGAAAGGAAGGAGAACGAGCCGCCAAAGCGC
CAAATCTCCCTTTCTACGGCAACGGAGTGGCTGAAGAAGATAGAATGCGA
ATACCACGACGGCAAAAAGGGGCTGTACTTCGATGGCCACGACGACAAGA
AGACCCTTGAATACCGGCACGACGAGTTCCTCCCGGCGCTGTTCGACACC
CGCGACTACATGGAGGTATGGATTCCGATGGGCAAGGATGAAGCGATCGT
CTGGGGTGTTGACGTCGAGACGGTGGAGGAGACCGAGCGCTTGCCGGATG
GTGGTGTCTGGGTTTGTGTCGATGATCTCGAGTCTGCGCTGGCAGACTTG
CCCGAAGACCTGCAAGCCAGAGTGCAGAGCAAGAAAACCTACCCTGACGA
GAGGCGGGCCATGCTTCTCTACCAGGACGAGAGCATATTTCGAGGCTAG

protein sequence of EsuBft3745_3a-0001

>EsuBft3745_3 ID=EsuBft3745_3|Name=EsuBft3745_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=332bp
MELDQERVYCLQQLVHDGYTLRDKLSIQRQKPRKDRLVLHSRSRANNTEL
KWRRRWITSGKPRGRDAVAEGIIIDEVTAADWDXXXXXXXXXXXXXXNQQ
HPQFEPQRQPLVHFKNSGLAGGYKFLLELDEGVFKLAKGWVLENCGILSG
QANKTVEDFRKWVNSTIMPMLEEQEKDGINAFHGLKVKLVERKENEPPKR
QISLSTATEWLKKIECEYHDGKKGLYFDGHDDKKTLEYRHDEFLPALFDT
RDYMEVWIPMGKDEAIVWGVDVETVEETERLPDGGVWVCVDDLESALADL
PEDLQARVQSKKTYPDERRAMLLYQDESIFRG

mRNA from alignment at Scaffold_265:180555..181782-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3745_3a-0001 ID=EsuBft3745_3a-0001|Name=EsuBft3745_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1228bp|location=Sequence derived from alignment at Scaffold_265:180555..181782- (Ectocarpus subulatus male Bft15b)
ATGGAACTCGACCAAGAGAGGGTCTACTGCCTGCAGCAGTTGGTTCATGA
CGGATACACGCTGCGCGACAAGCTCAGCATCCAGCGACAGAAGCCACGAA
AGGATCGGTTAGTGCTGCACTCAAGGTCGCGAGCCAACAATACTGAGTTG
AAATGGCGGCGCCGCTGGATCACGTCTGGGAAGCCACGCGGCCGCGACGC
CGTCGCGGAGGGAATCATCATAGACGAGGTGACTGCTGCTGACTGGGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAACAG
CACCCGCAGTTCGAGCCGCAGCGCCAGCCGTTGGTTCACTTCAAGAACTC
CGGTCTCGCAGGAGGATACAAGTACGGAAGACAGCTGTTTATCTAACTTT
CAGCTGGCGCACACGGTGTAAGCGGCCATGACATTGATCCAGTTGTACAC
CCAGCAGGCCGACGGCTTCGACCGGAAGGATGCACTGGCCATCGCAGCAG
AGGTTGGACGGAGAACCGTTCAAACAGTACAGCAGTGGGAGCGGGATTTC
ATCGCCCACGGACGCATAAAAAAACCTGACACAGGTCGCTTCAAGCGCAG
GTTTTTGCTGGAGCTCGACGAAGGCGTCTTCAAGCTCGCGAAAGGCTGGG
TGCTCGAGAACTGCGGGATACTCAGTGGGCAAGCCAATAAAACGGTGGAG
GATTTCCGCAAGTGGGTGAACAGCACCATCATGCCGATGCTGGAGGAGCA
GGAAAAGGACGGCATCAACGCTTTCCATGGATTGAAAGTAAAGCTGGTGG
AAAGGAAGGAGAACGAGCCGCCAAAGCGCCAAATCTCCCTTTCTACGGCA
ACGGAGTGGCTGAAGAAGATAGAATGCGAATACCACGACGGCAAAAAGGG
GCTGTACTTCGATGGCCACGACGACAAGAAGACCCTTGAATACCGGCACG
ACGAGTTCCTCCCGGCGCTGTTCGACACCCGCGACTACATGGAGGTATGG
ATTCCGATGGGCAAGGATGAAGCGATCGTCTGGGGTGTTGACGTCGAGAC
GGTGGAGGAGACCGAGCGCTTGCCGGATGGTGGTGTCTGGGTTTGTGTCG
ATGATCTCGAGTCTGCGCTGGCAGACTTGCCCGAAGACCTGCAAGCCAGA
GTGCAGAGCAAGAAAACCTACCCTGACGAGAGGCGGGCCATGCTTCTCTA
CCAGGACGAGAGCATATTTCGAGGCTAG

Coding sequence (CDS) from alignment at Scaffold_265:180555..181782-

>EsuBft3745_3a-0001 ID=EsuBft3745_3a-0001|Name=EsuBft3745_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=999bp|location=Sequence derived from alignment at Scaffold_265:180555..181782- (Ectocarpus subulatus male Bft15b)
ATGGAACTCGACCAAGAGAGGGTCTACTGCCTGCAGCAGTTGGTTCATGA
CGGATACACGCTGCGCGACAAGCTCAGCATCCAGCGACAGAAGCCACGAA
AGGATCGGTTAGTGCTGCACTCAAGGTCGCGAGCCAACAATACTGAGTTG
AAATGGCGGCGCCGCTGGATCACGTCTGGGAAGCCACGCGGCCGCGACGC
CGTCGCGGAGGGAATCATCATAGACGAGGTGACTGCTGCTGACTGGGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAACAG
CACCCGCAGTTCGAGCCGCAGCGCCAGCCGTTGGTTCACTTCAAGAACTC
CGGTCTCGCAGGAGGATACAAGTTTTTGCTGGAGCTCGACGAAGGCGTCT
TCAAGCTCGCGAAAGGCTGGGTGCTCGAGAACTGCGGGATACTCAGTGGG
CAAGCCAATAAAACGGTGGAGGATTTCCGCAAGTGGGTGAACAGCACCAT
CATGCCGATGCTGGAGGAGCAGGAAAAGGACGGCATCAACGCTTTCCATG
GATTGAAAGTAAAGCTGGTGGAAAGGAAGGAGAACGAGCCGCCAAAGCGC
CAAATCTCCCTTTCTACGGCAACGGAGTGGCTGAAGAAGATAGAATGCGA
ATACCACGACGGCAAAAAGGGGCTGTACTTCGATGGCCACGACGACAAGA
AGACCCTTGAATACCGGCACGACGAGTTCCTCCCGGCGCTGTTCGACACC
CGCGACTACATGGAGGTATGGATTCCGATGGGCAAGGATGAAGCGATCGT
CTGGGGTGTTGACGTCGAGACGGTGGAGGAGACCGAGCGCTTGCCGGATG
GTGGTGTCTGGGTTTGTGTCGATGATCTCGAGTCTGCGCTGGCAGACTTG
CCCGAAGACCTGCAAGCCAGAGTGCAGAGCAAGAAAACCTACCCTGACGA
GAGGCGGGCCATGCTTCTCTACCAGGACGAGAGCATATTTCGAGGCTAG