EsuBft359_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft359_9a-0001
Unique Name	EsuBft359_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_233	contig	Scaffold_233:271760..273197 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft359_9
Protein domains	IPR000571
Protein domains	Coil
Protein domains	SSF90229
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	143
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0046872

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft359_9a	EsuBft359_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_233 271760..273197 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_9a-0001-exon	EsuBft359_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 271760..273197 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_9a-0001-exon	agat-three_prime_utr-13893	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_233 271760..271781 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_9a-0001-cds	EsuBft359_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_233 271782..273197 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_9a-0001	EsuBft359_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_233 271782..273197 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:271760..273197-
coding sequence from alignment at Scaffold_233:271760..273197-

spliced messenger RNA

>EsuBft359_9a-0001 ID=EsuBft359_9a-0001|Name=EsuBft359_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1438bp|location=Sequence derived from alignment at Scaffold_233:271760..273197- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTGGCAGCCCAGCAGGAACAGCAGAACCCACCGCCGCAGCAACA
GCAGCCGCCGCCGCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGACGC
AGCAACTTCAACGTCAGCAGCAAGAAGCGGCAGCTGGGGCCGCAGCCGTG
GCGGGTTCGGCGGTCGGCGGGGATGAGGCACGGCTGGCCGACGGCATGGC
TGGTTTATCCGTGGAGGGCCTCGGTGGGTCGTCTGCGGTGGCCGGGGGGG
ACAACCTGGGTGCCGGTGCGGCGTCGGGGGCGCCGGGTGCGTTGCAGCTT
GTGATGTCGCAGCAAGATAACGAGAATCTCGTTGCGAAAGTATCGGCTTT
GGAGCAATCCCTGCAGCAGTTGCTGAACAACCAAGGTGGGGGCGCCGGTT
CGCACGTGGTCGGCCCGCACGCTGCTGATGGGGCGGGAGCCGCGGCGGCG
GTCGGTGCGGGTCTTGGTGCAGCTGCTGCTCCGGGGTCGGACGCTGATCG
CCAGCGTCGCTTCGCAAAAGCGGAATTCGAGAGTACTGCTTCCGCTTGGC
GTGCGGGACGTTTGATGTGGGCGCTGCGTGGTAAGCGGGGAATTGACGTT
CCCAACAAAGAGACCCTGCAAACGATGATGGGGGGGACCGTTACCGGCAC
CGACAAGACTTTGCAGCAGCTTCGTACCATGTCCGGACTGAACGTCCTCG
ACTTCTTTCCCGTTGGAAATTCTGGTGAGCTGTCAGTCCCGGACCACTTC
GATTTGACCTGTGCTGCGATCGTTAACGTGTTGAAATCTGGTCTCGCTGC
CACCTCCGCGGACAACGCTGCAGCTCTGGCGCGCTTGCTGCCCATGGAGC
AGGCCATGCTTTCGGCGCGGGGTACGCTGCGCATGCAAGCCCTCCGTCAT
GTGGGTGACTTTCCGGGGAGGGGGTCGCGGGGGACCTTCGCCGACCTCCC
CAACGATGACTTTCGTGAATGGGCAAATGCGGTAATGTTGTGGATGTTAC
CGATTCAGAATTTGCCGGTGCCGCCGGAGTCTTTCGAGCGCTTTAACCCC
CCGCCGGTTCCTCGGTTCGACGGCATCAATGGCTTCTCCATGTCCGGGAG
CATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGGTTCTTCTGGAT
CGAGTGGGGGTAAGAGACGGCGGGGGGACTCCCGCTCCGCGGGTGGGGAC
TCCAAACGCCGGTCGAAAGTGTGTTTCGAATATCGCGACTCCCAAACATG
CAGGTGGGGCGACTCCTGCGTGTTCCGCCATGCGACTGGGGGCGGCAAGG
GTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTGGAGGGGGAGCCTCGGGC
GCCGCGACCGATGGCGGAAGCGGCTCCTCGGCGTTGGTCGTTCGCCGGGG
AGATGGCAGCAACTGAGGACACGGGCTCTGCCTTTCGG

protein sequence of EsuBft359_9a-0001

>EsuBft359_9 ID=EsuBft359_9|Name=EsuBft359_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=471bp
MALAAQQEQQNPPPQQQQPPPQQPQQQQQQQQTQQLQRQQQEAAAGAAAV
AGSAVGGDEARLADGMAGLSVEGLGGSSAVAGGDNLGAGAASGAPGALQL
VMSQQDNENLVAKVSALEQSLQQLLNNQGGGAGSHVVGPHAADGAGAAAA
VGAGLGAAAAPGSDADRQRRFAKAEFESTASAWRAGRLMWALRGKRGIDV
PNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHF
DLTCAAIVNVLKSGLAATSADNAAALARLLPMEQAMLSARGTLRMQALRH
VGDFPGRGSRGTFADLPNDDFREWANAVMLWMLPIQNLPVPPESFERFNP
PPVPRFDGINGFSMSGSIALRMFGTVGGGGSSGSSGGKRRRGDSRSAGGD
SKRRSKVCFEYRDSQTCRWGDSCVFRHATGGGKGGGGGGGRASGGGGASG
AATDGGSGSSALVVRRGDGSN

mRNA from alignment at Scaffold_233:271760..273197-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft359_9a-0001 ID=EsuBft359_9a-0001|Name=EsuBft359_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1438bp|location=Sequence derived from alignment at Scaffold_233:271760..273197- (Ectocarpus subulatus male Bft15b)
ATGGCATTGGCAGCCCAGCAGGAACAGCAGAACCCACCGCCGCAGCAACA
GCAGCCGCCGCCGCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGACGC
AGCAACTTCAACGTCAGCAGCAAGAAGCGGCAGCTGGGGCCGCAGCCGTG
GCGGGTTCGGCGGTCGGCGGGGATGAGGCACGGCTGGCCGACGGCATGGC
TGGTTTATCCGTGGAGGGCCTCGGTGGGTCGTCTGCGGTGGCCGGGGGGG
ACAACCTGGGTGCCGGTGCGGCGTCGGGGGCGCCGGGTGCGTTGCAGCTT
GTGATGTCGCAGCAAGATAACGAGAATCTCGTTGCGAAAGTATCGGCTTT
GGAGCAATCCCTGCAGCAGTTGCTGAACAACCAAGGTGGGGGCGCCGGTT
CGCACGTGGTCGGCCCGCACGCTGCTGATGGGGCGGGAGCCGCGGCGGCG
GTCGGTGCGGGTCTTGGTGCAGCTGCTGCTCCGGGGTCGGACGCTGATCG
CCAGCGTCGCTTCGCAAAAGCGGAATTCGAGAGTACTGCTTCCGCTTGGC
GTGCGGGACGTTTGATGTGGGCGCTGCGTGGTAAGCGGGGAATTGACGTT
CCCAACAAAGAGACCCTGCAAACGATGATGGGGGGGACCGTTACCGGCAC
CGACAAGACTTTGCAGCAGCTTCGTACCATGTCCGGACTGAACGTCCTCG
ACTTCTTTCCCGTTGGAAATTCTGGTGAGCTGTCAGTCCCGGACCACTTC
GATTTGACCTGTGCTGCGATCGTTAACGTGTTGAAATCTGGTCTCGCTGC
CACCTCCGCGGACAACGCTGCAGCTCTGGCGCGCTTGCTGCCCATGGAGC
AGGCCATGCTTTCGGCGCGGGGTACGCTGCGCATGCAAGCCCTCCGTCAT
GTGGGTGACTTTCCGGGGAGGGGGTCGCGGGGGACCTTCGCCGACCTCCC
CAACGATGACTTTCGTGAATGGGCAAATGCGGTAATGTTGTGGATGTTAC
CGATTCAGAATTTGCCGGTGCCGCCGGAGTCTTTCGAGCGCTTTAACCCC
CCGCCGGTTCCTCGGTTCGACGGCATCAATGGCTTCTCCATGTCCGGGAG
CATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGGTTCTTCTGGAT
CGAGTGGGGGTAAGAGACGGCGGGGGGACTCCCGCTCCGCGGGTGGGGAC
TCCAAACGCCGGTCGAAAGTGTGTTTCGAATATCGCGACTCCCAAACATG
CAGGTGGGGCGACTCCTGCGTGTTCCGCCATGCGACTGGGGGCGGCAAGG
GTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTGGAGGGGGAGCCTCGGGC
GCCGCGACCGATGGCGGAAGCGGCTCCTCGGCGTTGGTCGTTCGCCGGGG
AGATGGCAGCAACTGAGGACACGGGCTCTGCCTTTCGG

Coding sequence (CDS) from alignment at Scaffold_233:271760..273197-

>EsuBft359_9a-0001 ID=EsuBft359_9a-0001|Name=EsuBft359_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1416bp|location=Sequence derived from alignment at Scaffold_233:271760..273197- (Ectocarpus subulatus male Bft15b)
ATGGCATTGGCAGCCCAGCAGGAACAGCAGAACCCACCGCCGCAGCAACA
GCAGCCGCCGCCGCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGACGC
AGCAACTTCAACGTCAGCAGCAAGAAGCGGCAGCTGGGGCCGCAGCCGTG
GCGGGTTCGGCGGTCGGCGGGGATGAGGCACGGCTGGCCGACGGCATGGC
TGGTTTATCCGTGGAGGGCCTCGGTGGGTCGTCTGCGGTGGCCGGGGGGG
ACAACCTGGGTGCCGGTGCGGCGTCGGGGGCGCCGGGTGCGTTGCAGCTT
GTGATGTCGCAGCAAGATAACGAGAATCTCGTTGCGAAAGTATCGGCTTT
GGAGCAATCCCTGCAGCAGTTGCTGAACAACCAAGGTGGGGGCGCCGGTT
CGCACGTGGTCGGCCCGCACGCTGCTGATGGGGCGGGAGCCGCGGCGGCG
GTCGGTGCGGGTCTTGGTGCAGCTGCTGCTCCGGGGTCGGACGCTGATCG
CCAGCGTCGCTTCGCAAAAGCGGAATTCGAGAGTACTGCTTCCGCTTGGC
GTGCGGGACGTTTGATGTGGGCGCTGCGTGGTAAGCGGGGAATTGACGTT
CCCAACAAAGAGACCCTGCAAACGATGATGGGGGGGACCGTTACCGGCAC
CGACAAGACTTTGCAGCAGCTTCGTACCATGTCCGGACTGAACGTCCTCG
ACTTCTTTCCCGTTGGAAATTCTGGTGAGCTGTCAGTCCCGGACCACTTC
GATTTGACCTGTGCTGCGATCGTTAACGTGTTGAAATCTGGTCTCGCTGC
CACCTCCGCGGACAACGCTGCAGCTCTGGCGCGCTTGCTGCCCATGGAGC
AGGCCATGCTTTCGGCGCGGGGTACGCTGCGCATGCAAGCCCTCCGTCAT
GTGGGTGACTTTCCGGGGAGGGGGTCGCGGGGGACCTTCGCCGACCTCCC
CAACGATGACTTTCGTGAATGGGCAAATGCGGTAATGTTGTGGATGTTAC
CGATTCAGAATTTGCCGGTGCCGCCGGAGTCTTTCGAGCGCTTTAACCCC
CCGCCGGTTCCTCGGTTCGACGGCATCAATGGCTTCTCCATGTCCGGGAG
CATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGGTTCTTCTGGAT
CGAGTGGGGGTAAGAGACGGCGGGGGGACTCCCGCTCCGCGGGTGGGGAC
TCCAAACGCCGGTCGAAAGTGTGTTTCGAATATCGCGACTCCCAAACATG
CAGGTGGGGCGACTCCTGCGTGTTCCGCCATGCGACTGGGGGCGGCAAGG
GTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTGGAGGGGGAGCCTCGGGC
GCCGCGACCGATGGCGGAAGCGGCTCCTCGGCGTTGGTCGTTCGCCGGGG
AGATGGCAGCAACTGA