EsuBft359_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft359_17a-0001
Unique NameEsuBft359_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:183023..184600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft359_17
Protein domainsCoil
Protein domainsIPR000477
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length146
Hectar predicted targeting categoryother localisation
Evalue1.98e-115
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17aEsuBft359_17aEctocarpus subulatus male Bft15bgeneScaffold_233 183023..184600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17a-0001EsuBft359_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 183221..184294 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17a-0001-exonagat-exon-31479Ectocarpus subulatus male Bft15bexonScaffold_233 183023..183059 +
EsuBft359_17a-0001-exonEsuBft359_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 183170..184600 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17a-0001-exonagat-five_prime_utr-8802Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 183023..183059 +
EsuBft359_17a-0001-exonagat-five_prime_utr-8803Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 183170..183220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17a-0001-cdsEsuBft359_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 183221..184294 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_17a-0001-exonagat-three_prime_utr-13878Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 184295..184600 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft359_17a-0001 ID=EsuBft359_17a-0001|Name=EsuBft359_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1468bp|location=Sequence derived from alignment at Scaffold_233:183023..184600+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGCAGTCCGGAAGG
GAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCG
GATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAAT
TGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTC
AGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAA
CATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACAC
ATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGT
CCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATA
GTCGCGAACCGGCACCTCGATACATGCATCAATTTGACGGTTTTCACGAG
CGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAATA
AGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACC
ATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAATT
GGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGC
AGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGG
GAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGGT
CAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGGCGAAGATGAAA
CGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCT
TGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGA
GGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACT
ATCTACATGGACCAATGGATGCAGGGACAAAGCTAAAGGCCAAATTCAGG
GCCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGA
CGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCAAATGCGAAGACC
GTGTCTCATTTAGTCGCGGAATGTCCGTGGTACAAGGAGAGGGAAGTTTA
CGGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTA
GAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCG
TCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAGGGCATGCAAAAC
ATAAGAGTACGAATCCCC
back to top

protein sequence of EsuBft359_17a-0001

>EsuBft359_17 ID=EsuBft359_17|Name=EsuBft359_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=358bp
MLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVQKSAVMVCNENKE
EPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKGKARAGK
LHPIVANRHLDTCINLTVFTSVIVPPLEYAGEVWEGNKKVVKELEAAQMK
AAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLP
RIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIGEDETLETEGLQGFKEK
ISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLK
AKFRAGDIGLRERRRRHRTVDEEDDEFKCDCGFKCEDRVSFSRGMSVVQG
EGSLRVXX
back to top

mRNA from alignment at Scaffold_233:183023..184600+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft359_17a-0001 ID=EsuBft359_17a-0001|Name=EsuBft359_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1578bp|location=Sequence derived from alignment at Scaffold_233:183023..184600+ (Ectocarpus subulatus male Bft15b)
GGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGATAANTC
AAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTCCACGCTGTCTC
CAACATTGTTCCAAGTCTTCTTCAACGATCTGTTGGAAGTCGTAGAGGCA
GTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAAT
GCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGC
AACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCT
GCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGA
ACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGG
ACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAAT
GCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCT
GCACCCAATAGTCGCGAACCGGCACCTCGATACATGCATCAATTTGACGG
TTTTCACGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGG
GAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGC
AGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGA
GGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAG
CTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAG
AATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCA
CGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGGC
GAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGAT
ATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCA
AGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGG
TTCAAGGACTATCTACATGGACCAATGGATGCAGGGACAAAGCTAAAGGC
CAAATTCAGGGCCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATA
GGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCAAA
TGCGAAGACCGTGTCTCATTTAGTCGCGGAATGTCCGTGGTACAAGGAGA
GGGAAGTTTACGGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGACTAGGGAAGACATTTTTGAGCCACCTT
TGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAA
CAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAGGG
CATGCAAAACATAAGAGTACGAATCCCC
back to top

Coding sequence (CDS) from alignment at Scaffold_233:183023..184600+

>EsuBft359_17a-0001 ID=EsuBft359_17a-0001|Name=EsuBft359_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1074bp|location=Sequence derived from alignment at Scaffold_233:183023..184600+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACT
GCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGT
CTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAG
GAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGT
GGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAG
CTGCACCCAATAGTCGCGAACCGGCACCTCGATACATGCATCAATTTGAC
GGTTTTCACGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTAT
GGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAA
GCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGT
GAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGA
AGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCG
AGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACC
CACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCG
GCGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAG
ATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATC
CAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAG
GGTTCAAGGACTATCTACATGGACCAATGGATGCAGGGACAAAGCTAAAG
GCCAAATTCAGGGCCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACA
TAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCA
AATGCGAAGACCGTGTCTCATTTAGTCGCGGAATGTCCGTGGTACAAGGA
GAGGGAAGTTTACGGGTGANNNNN
back to top