EsuBft329_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_20a-0001
Unique NameEsuBft329_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:35189..35479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_20
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length29
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_20aEsuBft329_20aEctocarpus subulatus male Bft15bgeneScaffold_604 35189..35479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_20a-0001-exonEsuBft329_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 35189..35479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_20a-0001-cdsEsuBft329_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 35189..35479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_20a-0001EsuBft329_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 35189..35479 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_20a-0001 ID=EsuBft329_20a-0001|Name=EsuBft329_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_604:35189..35479- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGAAGGTGTTCGGCTACCACCACGGATTGACGCTTTCCCCGCG
TTATCCTCCAGCAGTGCTGCTACCGGTGCAAAACAAAGATGAGAGTAGTA
GTGCAGTCAAAGATTATGCCGTTTGTGTTGCATCCGCAGCAACTGGCAGA
GAGGCAGTTGTAGCCGTAACCTCATGCAGCAGACACAGCAGCAGCGGAAC
AGTACAAACAGCGTGGAAATGCCTTCGCCGGCATCACTACCGAGCTGCTG
TGCTGTGCGTGGTGAGCAACCAAGGCCGCTTGCTTGGATGA
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protein sequence of EsuBft329_20a-0001

>EsuBft329_20 ID=EsuBft329_20|Name=EsuBft329_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MASKVFGYHHGLTLSPRYPPAVLLPVQNKDESSSAVKDYAVCVASAATGR
EAVVAVTSCSRHSSSGTVQTAWKCLRRHHYRAAVLCVVSNQGRLLG
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mRNA from alignment at Scaffold_604:35189..35479-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_20a-0001 ID=EsuBft329_20a-0001|Name=EsuBft329_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_604:35189..35479- (Ectocarpus subulatus male Bft15b)
ATGGCTTCGAAGGTGTTCGGCTACCACCACGGATTGACGCTTTCCCCGCG
TTATCCTCCAGCAGTGCTGCTACCGGTGCAAAACAAAGATGAGAGTAGTA
GTGCAGTCAAAGATTATGCCGTTTGTGTTGCATCCGCAGCAACTGGCAGA
GAGGCAGTTGTAGCCGTAACCTCATGCAGCAGACACAGCAGCAGCGGAAC
AGTACAAACAGCGTGGAAATGCCTTCGCCGGCATCACTACCGAGCTGCTG
TGCTGTGCGTGGTGAGCAACCAAGGCCGCTTGCTTGGATGA
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Coding sequence (CDS) from alignment at Scaffold_604:35189..35479-

>EsuBft329_20a-0001 ID=EsuBft329_20a-0001|Name=EsuBft329_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_604:35189..35479- (Ectocarpus subulatus male Bft15b)
ATGGCTTCGAAGGTGTTCGGCTACCACCACGGATTGACGCTTTCCCCGCG
TTATCCTCCAGCAGTGCTGCTACCGGTGCAAAACAAAGATGAGAGTAGTA
GTGCAGTCAAAGATTATGCCGTTTGTGTTGCATCCGCAGCAACTGGCAGA
GAGGCAGTTGTAGCCGTAACCTCATGCAGCAGACACAGCAGCAGCGGAAC
AGTACAAACAGCGTGGAAATGCCTTCGCCGGCATCACTACCGAGCTGCTG
TGCTGTGCGTGGTGAGCAACCAAGGCCGCTTGCTTGGATGA
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