EsuBft329_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_19a-0001
Unique NameEsuBft329_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:51091..56189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_19
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length189
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19aEsuBft329_19aEctocarpus subulatus male Bft15bgeneScaffold_604 51091..56189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19a-0001EsuBft329_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 51103..54998 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19a-0001-exonagat-exon-87692Ectocarpus subulatus male Bft15bexonScaffold_604 51091..51162 +
EsuBft329_19a-0001-exonEsuBft329_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 54122..54721 +
EsuBft329_19a-0001-exonagat-exon-87693Ectocarpus subulatus male Bft15bexonScaffold_604 54798..55170 +
EsuBft329_19a-0001-exonagat-exon-87694Ectocarpus subulatus male Bft15bexonScaffold_604 55339..56189 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19a-0001-exonagat-five_prime_utr-8180Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 51091..51102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19a-0001-cdsEsuBft329_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 51103..51162 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_19a-0001-exonagat-three_prime_utr-12907Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 54999..55170 +
EsuBft329_19a-0001-exonagat-three_prime_utr-12908Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 55339..56189 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_19a-0001 ID=EsuBft329_19a-0001|Name=EsuBft329_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1896bp|location=Sequence derived from alignment at Scaffold_604:51091..56189+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGGGAGGGGATGGGGGTCGCGACCGTTGTTAACGTGCACCTCGGCAA
CGAGGGCGATACCGAAAAACAGGTGACCGGTCTCCTGTCGCTGCTTGAGG
ATCTCCGCGCGGGAAATCTACGAACGAGAGATCTACGAGAGCGAGACGGC
ATCCGCAGAGACCAACACATGCCGAAGACGAGCAACCAGCGACGGCGGAA
ACTCCGAAGAAAAAAAGGAGAAGATCTCGCGGTACGCGGCTTGGACGAAG
ATCGGAGACTGCTGATCGTTGTCGGAGACTTCAACTTCGAATCCACCTCG
TCCGGTTACAGGCGCATGGTATCCGAGGGCGGTCTTCAATCCGCCGCAAA
TGTTTCCGCCGAAGCAGCAGAAGCAGAAGCGACAGGCTGGTTTCCCCCCG
CAACGGCTTCTAATTTCCCCGCAATAATTCCGAATTATCCCGTGAAGGTC
TATCACCCCGCACCGAAACTAGCGGACGATGGCGTCGTCCCCGACAAACG
CGAGGTACTTCGGAGCCTTGTCGGTGACGGTGCTGCCGCTGTCAACGCTA
GTGAAGGTGTCGCAGGTGGTGTTGAAAACGATGGTCACCGCAATGATGCC
CTTGGTGTTGGCAGCGGTAGCGGTGGTGTTGTTGATGACTTCGACGATGG
AGACGTTGTCGGCGGCGTTTCGGCAATGAGAGTGGACACCTTTGTTGCCG
GAGACGCTGACAACAGAGGCGCCCTAGATTTCGTTTTTTTTTCTGCCGGA
GGCGGCGGAATCTCGTGCCGGAGCTACGAGGTCCACCGAGAGTTTTCCCA
GGAGCGGTACGCGGACGGGTATCCCTCCGTCGCCGAGTTCGAGGTCTCGT
GCCCCCCGCTTGCTCCGGAGTGAGACCACAAAAAAACACAGGAGCAGCGA
TTCGTTGCGGTGCGTGTTAAAAAGCACGAAGGTCAGGTGGACTTCCAGCG
GGCACGATGGCTGTTGTTTTTCTCGGGAACGGTATGCGGATGGCAACCCT
TCCGTCGCCAAGTTCGTAGATCTCCCGCCCCTCCCTGGCGCTGGATGACC
ACCACGTGATCAAAACACAGGAGCAGCGACGCGTAGCGGTATATGCTGAA
AGCACGATGACCACGTTGATGAGTCGGCCGCTGAACGGCAGTCCAGTGTT
TTTTTTTACGTGGTTCACCACGGTGCTTTCCGAGCTTTGTCTCAAAAGTT
ACGATAAGTTCCCGAGGAGTCAGAGCGGCGGGCTCTTCCGCTTGCTGCCT
CTTCTGACTGTTAGCTGTAATTCTTTTACCTGACGGCATGTAGATACGTC
GTCCTATTTTATATCTTTTCGTCTGTACAGTACGGATACTTTGGAAGGTA
GTGAGCGGAGACCAGGACGGTTTTTTGATGTGAACAGGACAACGACAGCA
GGAACAACTGTTTCGTGTATGTGCGGCGTTGGTAAAGAGCATCACTTTTT
TTCTTTTTTTCTTTTTGCCGTGAACACGGCATTGATCGACTGGTGCCAAG
CCGACCACCGACGGCTGACCTAGTGAGAAAACATTCTGCCAATCCTAACG
CCTGCCATAACAGACTCCCCCCCCGTCGTGTTGGTCTGCAAGCAAGCGGC
GTGCACTGTTTTTTTTCGGGCTTGCCGTGGCGAAGTCACCAAGCGTGTGT
GGTAGATATATGTAGCATGCAGGTGGTAGATAGATGTAACATGCAGCATT
TTGGCCCGGCAATTAGCGAAGGCATGGCTTAGGTGGCAGATAGATGTGGC
ACGCAGCAATTGTTTTCAGGCATAAGAGTGAACGCATCGGGGGTGCGGCA
GACAGGGTTAGCATGGCGAGTTTGGAGGCGCTTCAGAGGAACCTCAGCGC
GCAAACGAACGGCCAGCGACACACATCGGCATATGTCAAGCATATT
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protein sequence of EsuBft329_19a-0001

>EsuBft329_19 ID=EsuBft329_19|Name=EsuBft329_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MGVATVVNVHLGNEGDTEKQVTGLLSLLEDLRAGNLRTRDLRERDGIRRD
QHMPKTSNQRRRKLRRKKGEDLAVRGLDEDRRLLIVVGDFNFESTSSGYR
RMVSEGGLQSAANVSAEAAEAEATGWFPPATASNFPAIIPNYPVKVYHPA
PKLADDGVVPDKREVLRSLVGDGAAAVNASEGVAGGVENDGHRNDALGVG
SGSGGVVDDFDDGDVVGGVSAMRVDTFVAGDADNRGALDFVFFSAGGGGI
SCRSYEVHREFSQERYADGYPSVAEFEVSCPPLAPE
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mRNA from alignment at Scaffold_604:51091..56189+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_19a-0001 ID=EsuBft329_19a-0001|Name=EsuBft329_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5099bp|location=Sequence derived from alignment at Scaffold_604:51091..56189+ (Ectocarpus subulatus male Bft15b)
CTGGGGGAGGGGATGGGGGTCGCGACCGTTGTTAACGTGCACCTCGGCAA
CGAGGGCGATACCGAAAAACAGGTGGGTAAAAAAATGTTTGTACAGCATC
TTGTGGTCCGGCCACGTATAGGAGGGCGATACCGACGTGGGCAAAAATAT
TTTGTACAGTTTTTCGTGGGCCGGCCCTGCATAGGAGGGCGATACCGAGG
TGTCTGTACAGGCGGGCCCTGAATTGTAGGGCGGTACCGAGGTGGGTAAC
AAAGGTCTGTACAGGCGGGCCCTGAATAGTAGGGCGATACCGAAGAACAG
GTAGGTGAAATGTTTGTACAGCAGTGGTGGGCCGGCCCTGTATTGTGTCG
GCCGAATAGTGACGTGTACCCGGTGGTTTCGTCTCACACGCACTGAACCA
CCAAGTCGTTCTGTACTTTGAATAGTGCCGGTGTCCTATAGAGTGCCGGA
AAAGAATCTGCAAACACATACCGGCACTAAAAAGGGACCTCTACCGTAAA
ATACTACGGTGGTGGGTCCTGAATAGTGCTGGTCGAATAGTGCCGGGTGT
CCGGTGTAATGCCGGTGTTATCGGCTGACACACACTGAAATGAAATACGA
AGCCGTGCTGTACATTGAATACTGTACACGGCACGAGAGAACGCACCCCC
TGGACTGATTTTTCAAAGCTCGATTTATCAACAGCAGAAAGAGTCACACA
CAGCGCCGAAAACGGTGGCGTCGAAGCCGTCTGGTCTAGAGCTCTCCGAA
AGCGTATCGTTTCGTGGATGCATCCTCTTCATCGTGGAGCAATCGACCTT
TGAAACAGGTTCAGGGGGCGTCTTATCTCGTGCCGTATACGGTGGTCCCG
GTTTCCGGTATAAGTGCCAGAAAAAATTCTGGATGCATACCGGCAGTATA
CAGGGCCCCTGCTAGGCCCTTGCTGTATCACAAACTGGATTTTAGCTTGT
ATCACAAGCTGTTTCTTTTTTTTTTATCACAAGCATGTAGTTTCGATCAC
AAAAAGGGCATGTTTGTATCGCAAACACAGGTGTGTTTGTATCTCAAAGC
AGGCGCCCTTGCATATCAAGTCAACGCTTTTTAGGTAAATGTGCGTGTCA
CAAACTGGTGCACCTGTATCAACTAGTCAGCGGTAATTACCGTATATGAC
ACAAGATAACACACCCCCTTGACCGATTTTCGAAGCTCGACTTCTCAACT
GCAGGAACAGCCACAGCGCCAAAAACGGCGGCGTTGAAACTGCTCGTCGA
CAGCTTTTCGAAAATGTTTCATTTCGTTTATGCATCCTCTTCGTCGTGGA
GTAACCGAGCTTTGAAAAATGGTCCAGGGGGTGTCTTATCTTGTGTCATA
TGCGGTATTTGGAGCATTTGTCATGGCTGCCGTCGTCCTTGTAAGGAGAC
GTTGTGAGCGTAGACAACCTCGTCGCCAGCCGATCAACCACGCCTCGGGC
TGGCAGGGGGGAGGGAGGGGGTAAGCTTAGCTTTTGAGAAAGCAGCAGCA
TCCTCGCAAGACTCCGATAATGTTTGAGGATGCTGCTGCTTTCTCGAAAG
CTAAGCTTCCCTCCTCCCTCCCTCCCGCCAGCCTGAGGGGTGGTTGATCG
CCTGGCGATAGGTTTGTCGACTTTCGCACCGTCTCCTTCGAGAAACAAAC
TGAGAGAAAAAAACAACACAGCGAAACAGTAGTCGTAGACCACCACATGC
GTGCCCGCGTCTCCTTCGACCCCCTCCGTCGTCCGTCATTTTTCTAGACG
ACGAACGGGGTAGATCACCGAACCCGAAAGACGCGAAGAAGGCTTGGAAC
AATACAACGATGTTTTCTTACGCCTAGACGTCCAAACTCGGCTGACGGAG
AAGCTGTTAGTACATATATTTACGGGGACACATTGTTTGGAATTAAATGT
TGGCAAGGTTTGTTCGGGACATTTGCATACGTTCGCCAGGATATGCGGTA
CAGTGTCGCATTTTTTGGTGGAAAAAAGCGAAGTGTTGTGGAATGTTTGA
AGCGGACGGCGTGCTGTTCGTCTTGTCTCCTTGAAGTTGAGGAAAGGCGC
AACTGCCAGTTGGTCCCGAAAAAATACCACGGTGTGATGAAAGCTAAGTA
CGGCGCAGTCCTAGAAGGCGCCGTCCCTCCCATAGCTGCATAGACTCAAC
ACGACGAGTGGATTGCTCTTACCTGGGCCGACGAAGAAGCTATTTAGCAT
AGCACTCGCTCGTCCCGCCGTAACTTTGATCGACACGAATTTCTAGCGGA
ACCGGAGCAGGAGGCCTCACTCAACCAAATCTAATACTTGCAGTGAATGA
TTTGGGTGGGGGCCAAGAATTCAAGCAGGAAACAAACGTGCAAGAGCAAA
AAAGAACCCGATGTCCGTCCGCACAGTAGAATGAGCGGCAGCGTCGACAC
ATGGTGACGTTGAGGAGCCGTCTCGTCCAGAGAGCTTTCCGATAAGTAAT
ATCGTTGCATTTGTGCGTCGTTTCCCGTTGTGGAGAAAAAGCCGAGCTTT
GAAATCGGTCCGGGGTGTGTGTAATCTTCCGTCACCTACGGTGTGCCAGG
GGTTTCGCTACCTCGGAGTAGAGATGGTGCCCAATCCCTTCTCCGGACGG
ATGCTTGGTAGCCATCAACGCCCTTCAATACAGTAAGTCGCAAATGAGGA
TGCTCATTCTCCCTGCCCCCCGTCCTATACGGTCTGAAGACTTTACGCGA
CCATGCGGGGAAATTTGAGACTTGTACCCTCCCCCACTCAGAACGATTGG
CCATCAGTGTGTTGGTCTTGTGGGAACAATGCTCCGTCCTCTCGAGGACG
CGTGGCCAAAGGGTCCAACGAACAGCCACACATGGTGCGCAAACCATGAG
TACGACCTCCCGCCAGTCGTCAGATTCATCTCTTTACGACCGTGCCAGGC
CGACAACAACGACTTCGCCAGACAAGAATATCCTCGCAGTCCCCCCCCGA
ACAATCGCACTCCCCCGCATGTCCGCACTCGTCCCCCCCCCGCTCCCCTC
ATCGTGGCGTCTCCCGTTCGCCTCTTCTTAGGTGACCGGTCTCCTGTCGC
TGCTTGAGGATCTCCGCGCGGGAAATCTACGAACGAGAGATCTACGAGAG
CGAGACGGCATCCGCAGAGACCAACACATGCCGAAGACGAGCAACCAGCG
ACGGCGGAAACTCCGAAGAAAAAAAGGAGAAGATCTCGCGGTACGCGGCT
TGGACGAAGATCGGAGACTGCTGATCGTTGTCGGAGACTTCAACTTCGAA
TCCACCTCGTCCGGTTACAGGCGCATGGTATCCGAGGGCGGTCTTCAATC
CGCCGCAAATGTTTCCGCCGAAGCAGCAGAAGCAGAAGCGACAGGCTGGT
TTCCCCCCGCAACGGCTTCTAATTTCCCCGCAATAATTCCGAATTATCCC
GTGAAGGTCTATCACCCCGCACCGAAACTAGCGGACGATGGCGTCGTCCC
CGACAAACGCGAGGTACTTCGGAGCCTTGTCGGTGACGGTGCTGCCGCTG
TCAACGCTAGTGAAGGTGTCGCAGGTGGTGTTGAAAACGATGGTCACCGC
AATGATGCCCTTGGTGTTGGCAGCGGTAGCGGTGGTGTTGTTGATGACTT
CGACGATGGAGACGTTGTCGGCGGCGTTTCGGTTCGTGTCGGTGGCGGTG
GGAACAACGGTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGC
GAGGGAGGCAATGAGAGTGGACACCTTTGTTGCCGGAGACGCTGACAACA
GAGGCGCCCTAGATTTCGTTTTTTTTTCTGCCGGAGGCGGCGGAATCTCG
TGCCGGAGCTACGAGGTCCACCGAGAGTTTTCCCAGGAGCGGTACGCGGA
CGGGTATCCCTCCGTCGCCGAGTTCGAGGTCTCGTGCCCCCCGCTTGCTC
CGGAGTGAGACCACAAAAAAACACAGGAGCAGCGATTCGTTGCGGTGCGT
GTTAAAAAGCACGAAGGTCAGGTGGACTTCCAGCGGGCACGATGGCTGTT
GTTTTTCTCGGGAACGGTATGCGGATGGCAACCCTTCCGTCGCCAAGTTC
GTAGATCTCCCGCCCCTCCCTGGCGCTGGAGTGACCACCACGCAAGCACG
GGAGGATGAGCGGTTCATGTTGAAAAGCACGATGACCTCTGAACTACCAG
CGGGCACGATGACTGGTGGTTTTCCCAGGAACGGTACGCGGATGGCTATC
CTTCCGTGGCCGAGTCCGTAGGTCTCCCGCCCCTCCCTGGCGCTGGAGTG
ACCACCACGTGATCAAAACACAGGAGCAGCGACGCGTAGCGGTATATGCT
GAAAGCACGATGACCACGTTGATGAGTCGGCCGCTGAACGGCAGTCCAGT
GTTTTTTTTTACGTGGTTCACCACGGTGCTTTCCGAGCTTTGTCTCAAAA
GTTACGATAAGTTCCCGAGGAGTCAGAGCGGCGGGCTCTTCCGCTTGCTG
CCTCTTCTGACTGTTAGCTGTAATTCTTTTACCTGACGGCATGTAGATAC
GTCGTCCTATTTTATATCTTTTCGTCTGTACAGTACGGATACTTTGGAAG
GTAGTGAGCGGAGACCAGGACGGTTTTTTGATGTGAACAGGACAACGACA
GCAGGAACAACTGTTTCGTGTATGTGCGGCGTTGGTAAAGAGCATCACTT
TTTTTCTTTTTTTCTTTTTGCCGTGAACACGGCATTGATCGACTGGTGCC
AAGCCGACCACCGACGGCTGACCTAGTGAGAAAACATTCTGCCAATCCTA
ACGCCTGCCATAACAGACTCCCCCCCCGTCGTGTTGGTCTGCAAGCAAGC
GGCGTGCACTGTTTTTTTTCGGGCTTGCCGTGGCGAAGTCACCAAGCGTG
TGTGGTAGATATATGTAGCATGCAGGTGGTAGATAGATGTAACATGCAGC
ATTTTGGCCCGGCAATTAGCGAAGGCATGGCTTAGGTGGCAGATAGATGT
GGCACGCAGCAATTGTTTTCAGGCATAAGAGTGAACGCATCGGGGGTGCG
GCAGACAGGGTTAGCATGGCGAGTTTGGAGGCGCTTCAGAGGAACCTCAG
CGCGCAAACGAACGGCCAGCGACACACATCGGCATATGTCAAGCATATT
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Coding sequence (CDS) from alignment at Scaffold_604:51091..56189+

>EsuBft329_19a-0001 ID=EsuBft329_19a-0001|Name=EsuBft329_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_604:51091..56189+ (Ectocarpus subulatus male Bft15b)
ATGGGGGTCGCGACCGTTGTTAACGTGCACCTCGGCAACGAGGGCGATAC
CGAAAAACAGGTGACCGGTCTCCTGTCGCTGCTTGAGGATCTCCGCGCGG
GAAATCTACGAACGAGAGATCTACGAGAGCGAGACGGCATCCGCAGAGAC
CAACACATGCCGAAGACGAGCAACCAGCGACGGCGGAAACTCCGAAGAAA
AAAAGGAGAAGATCTCGCGGTACGCGGCTTGGACGAAGATCGGAGACTGC
TGATCGTTGTCGGAGACTTCAACTTCGAATCCACCTCGTCCGGTTACAGG
CGCATGGTATCCGAGGGCGGTCTTCAATCCGCCGCAAATGTTTCCGCCGA
AGCAGCAGAAGCAGAAGCGACAGGCTGGTTTCCCCCCGCAACGGCTTCTA
ATTTCCCCGCAATAATTCCGAATTATCCCGTGAAGGTCTATCACCCCGCA
CCGAAACTAGCGGACGATGGCGTCGTCCCCGACAAACGCGAGGTACTTCG
GAGCCTTGTCGGTGACGGTGCTGCCGCTGTCAACGCTAGTGAAGGTGTCG
CAGGTGGTGTTGAAAACGATGGTCACCGCAATGATGCCCTTGGTGTTGGC
AGCGGTAGCGGTGGTGTTGTTGATGACTTCGACGATGGAGACGTTGTCGG
CGGCGTTTCGGCAATGAGAGTGGACACCTTTGTTGCCGGAGACGCTGACA
ACAGAGGCGCCCTAGATTTCGTTTTTTTTTCTGCCGGAGGCGGCGGAATC
TCGTGCCGGAGCTACGAGGTCCACCGAGAGTTTTCCCAGGAGCGGTACGC
GGACGGGTATCCCTCCGTCGCCGAGTTCGAGGTCTCGTGCCCCCCGCTTG
CTCCGGAGTGA
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