EsuBft329_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft329_10a-0001
Unique Name	EsuBft329_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_604	contig	Scaffold_604:173795..175251 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft329_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	138
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-07_001090.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft329_10a	EsuBft329_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_604 173795..175251 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_10a-0001-exon	EsuBft329_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 173795..175172 -
EsuBft329_10a-0001-exon	agat-exon-87648	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 175242..175251 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_10a-0001-exon	agat-three_prime_utr-12892	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_604 173795..174558 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_10a-0001-cds	EsuBft329_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_604 174559..175172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft329_10a-0001	EsuBft329_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_604 174559..175251 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_604:173795..175251-
coding sequence from alignment at Scaffold_604:173795..175251-

spliced messenger RNA

>EsuBft329_10a-0001 ID=EsuBft329_10a-0001|Name=EsuBft329_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1388bp|location=Sequence derived from alignment at Scaffold_604:173795..175251- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCCGGCTTCGTCCCAATCACAACGATCAACAACGACAACATCAG
AGCCATGACTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCA
ACGTCGCTGGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTC
ACCCGCGGTGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCT
CGAGGCCGAGGTCGACCACGGGAAGGTGCTCTTCGTGTCCGCCATCCACA
AGCCGGACCTCTCCGCCGAGGCCCGCACCAACGCCGTCCGACCCATGGAG
CGCCTTGGAGCCCGCGGCCGCTTCACGCCGGGGGGGCGTCGCTGGGCCGG
TGGCAAGCCTCGCGACGTACCGCTCGAGGCCGAGGTCGACCACGGCAAGG
TGCTCTTCGTGTCCGCCGTCCACAAGCCGGATCTCTCCGCCGAGGCCCGC
ACCAACGCCGTCCGCCCGACGGAGCGCCTCGGCTCCCGGGGCCGCTTCAC
CGCGGGCGTCCGTCGCTGGGCCGGTGGCGAGCCTCGTGACGTGCCGCTCC
CGCGCGTGTGCGACCCGGGTACCGTCCTGTTCGAGTCCGCCTCGGAACGT
AGCAGGCCCTCCTTGTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTG

protein sequence of EsuBft329_10a-0001

>EsuBft329_10 ID=EsuBft329_10|Name=EsuBft329_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=208bp
MRAGFVPITTINNDNIRAMTSVHKPDLSGLPAFNVAGGRPDERFGTRGSF
TRGVHIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSAEARTNAVRPME
RLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEAR
TNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASER
SRPSLSXX

mRNA from alignment at Scaffold_604:173795..175251-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft329_10a-0001 ID=EsuBft329_10a-0001|Name=EsuBft329_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1457bp|location=Sequence derived from alignment at Scaffold_604:173795..175251- (Ectocarpus subulatus male Bft15b)
ATGCGAGCCGGTATCTCATCATTTTGTTGTCGTTCCCCCTGCCCACGATG
TCTCCGCCCGCTGCCCCGCCAATATTCAGGCTTCGTCCCAATCACAACGA
TCAACAACGACAACATCAGAGCCATGACTTCCGTCCACAAGCCCGACCTC
TCCGGCCTGCCCGCCTTCAACGTCGCTGGCGGTCGCCCCGACGAGCGCTT
CGGTACCAGGGGCTCCTTCACCCGCGGTGTGCACATCATGTCCGGTGGCC
ATGCTCGCGATGTACCGCTCGAGGCCGAGGTCGACCACGGGAAGGTGCTC
TTCGTGTCCGCCATCCACAAGCCGGACCTCTCCGCCGAGGCCCGCACCAA
CGCCGTCCGACCCATGGAGCGCCTTGGAGCCCGCGGCCGCTTCACGCCGG
GGGGGCGTCGCTGGGCCGGTGGCAAGCCTCGCGACGTACCGCTCGAGGCC
GAGGTCGACCACGGCAAGGTGCTCTTCGTGTCCGCCGTCCACAAGCCGGA
TCTCTCCGCCGAGGCCCGCACCAACGCCGTCCGCCCGACGGAGCGCCTCG
GCTCCCGGGGCCGCTTCACCGCGGGCGTCCGTCGCTGGGCCGGTGGCGAG
CCTCGTGACGTGCCGCTCCCGCGCGTGTGCGACCCGGGTACCGTCCTGTT
CGAGTCCGCCTCGGAACGTAGCAGGCCCTCCTTGTCCTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNGTTG

Coding sequence (CDS) from alignment at Scaffold_604:173795..175251-

>EsuBft329_10a-0001 ID=EsuBft329_10a-0001|Name=EsuBft329_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_604:173795..175251- (Ectocarpus subulatus male Bft15b)
ATGCGAGCCGGCTTCGTCCCAATCACAACGATCAACAACGACAACATCAG
AGCCATGACTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCA
ACGTCGCTGGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTC
ACCCGCGGTGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCT
CGAGGCCGAGGTCGACCACGGGAAGGTGCTCTTCGTGTCCGCCATCCACA
AGCCGGACCTCTCCGCCGAGGCCCGCACCAACGCCGTCCGACCCATGGAG
CGCCTTGGAGCCCGCGGCCGCTTCACGCCGGGGGGGCGTCGCTGGGCCGG
TGGCAAGCCTCGCGACGTACCGCTCGAGGCCGAGGTCGACCACGGCAAGG
TGCTCTTCGTGTCCGCCGTCCACAAGCCGGATCTCTCCGCCGAGGCCCGC
ACCAACGCCGTCCGCCCGACGGAGCGCCTCGGCTCCCGGGGCCGCTTCAC
CGCGGGCGTCCGTCGCTGGGCCGGTGGCGAGCCTCGTGACGTGCCGCTCC
CGCGCGTGTGCGACCCGGGTACCGTCCTGTTCGAGTCCGCCTCGGAACGT
AGCAGGCCCTCCTTGTCCTTNNNN