EsuBft2989_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2989_3a-0001
Unique NameEsuBft2989_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:142367..143330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLA9
ProteomeIdEsuBft2989_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D8LLA9|-
Length51
Hectar predicted targeting categorysignal anchor
Evalue2.42e-27
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-01_004170.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_3aEsuBft2989_3aEctocarpus subulatus male Bft15bgeneScaffold_360 142367..143330 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_3a-0001-exonagat-exon-20733Ectocarpus subulatus male Bft15bexonScaffold_360 142367..142551 +
EsuBft2989_3a-0001-exonEsuBft2989_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 143006..143330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_3a-0001-cdsEsuBft2989_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 142367..142551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_3a-0001EsuBft2989_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 142367..143330 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=510bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTCCCCACTCCTGGC
GACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTGGCGC
GTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTTGATA
ATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGATGCG
GGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCACTGGG
GACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGTTGCC
TTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTGGCCT
GGAAACGTGA
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protein sequence of EsuBft2989_3a-0001

>EsuBft2989_3 ID=EsuBft2989_3|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MHWVQHIKEPQDGSSTSRNHKMGHIIALDVVLMSMLVGFTLTALSHISAA
WRLRKDFFFSVRSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLI
IFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVA
FGIVEVIAWSAVLLFGLET
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mRNA from alignment at Scaffold_360:142367..143330+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTACGACATAGAGAG
AGAAGGTAACCGTGACCATCGACGAATCGATGTCTGTCTGAGATGCGCAC
GAACCTCGCGATATGCTGGGAATATCACACGCACCAATACAGGTTGGATA
GCATCTTCCTACATCAATTACTGGTGACAGGTTAGCTGCAATAGTTTCGA
CGGTGGTGACAAAATCCACTGCTACTGCTGTGGCTGCATTTGAGGAGTCG
CGGGTCGCGTCGCATCAGTCTACACTGTAACGCTAGTAGTATGCCCTGTA
TCCGCTGTTGTCGCGGGCAACGAACAACCGCAGTGGGTCCACGGTAAGCG
TCCTTGTCAACCCGAGGGATGTTTCGTTTACAGCACGTACCTTCCTTTGC
TCTACCAGCTGTTGCGTAAGACCTACCTACCGACCGGCCTGGGTGTCCTT
ATTTCTGTATTGCCCACGATCGAATCAATTATGGAGCAGGTCCCCACTCC
TGGCGACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTG
GCGCGTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTT
GATAATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGA
TGCGGGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCAC
TGGGGACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGT
TGCCTTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTG
GCCTGGAAACGTGA
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Coding sequence (CDS) from alignment at Scaffold_360:142367..143330+

>EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTCCCCACTCCTGGC
GACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTGGCGC
GTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTTGATA
ATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGATGCG
GGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCACTGGG
GACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGTTGCC
TTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTGGCCT
GGAAACGTGA
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