Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LLA9 |
| ProteomeId | EsuBft2989_3 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2880.D8LLA9|- |
| Length | 51 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 2.42e-27 |
| EggNOG OGs | 2D0MX@1|root,2SERP@2759|Eukaryota |
| Ec32 ortholog description | RGS domain |
| Ec32 ortholog | Ec-01_004170.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Regulator of G protein signaling domain |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=510bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTCCCCACTCCTGGC
GACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTGGCGC
GTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTTGATA
ATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGATGCG
GGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCACTGGG
GACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGTTGCC
TTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTGGCCT
GGAAACGTGA back to topprotein sequence of EsuBft2989_3a-0001 >EsuBft2989_3 ID=EsuBft2989_3|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MHWVQHIKEPQDGSSTSRNHKMGHIIALDVVLMSMLVGFTLTALSHISAA
WRLRKDFFFSVRSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLI
IFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVA
FGIVEVIAWSAVLLFGLET back to topmRNA from alignment at Scaffold_360:142367..143330+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTACGACATAGAGAG
AGAAGGTAACCGTGACCATCGACGAATCGATGTCTGTCTGAGATGCGCAC
GAACCTCGCGATATGCTGGGAATATCACACGCACCAATACAGGTTGGATA
GCATCTTCCTACATCAATTACTGGTGACAGGTTAGCTGCAATAGTTTCGA
CGGTGGTGACAAAATCCACTGCTACTGCTGTGGCTGCATTTGAGGAGTCG
CGGGTCGCGTCGCATCAGTCTACACTGTAACGCTAGTAGTATGCCCTGTA
TCCGCTGTTGTCGCGGGCAACGAACAACCGCAGTGGGTCCACGGTAAGCG
TCCTTGTCAACCCGAGGGATGTTTCGTTTACAGCACGTACCTTCCTTTGC
TCTACCAGCTGTTGCGTAAGACCTACCTACCGACCGGCCTGGGTGTCCTT
ATTTCTGTATTGCCCACGATCGAATCAATTATGGAGCAGGTCCCCACTCC
TGGCGACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTG
GCGCGTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTT
GATAATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGA
TGCGGGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCAC
TGGGGACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGT
TGCCTTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTG
GCCTGGAAACGTGA back to topCoding sequence (CDS) from alignment at Scaffold_360:142367..143330+ >EsuBft2989_3a-0001 ID=EsuBft2989_3a-0001|Name=EsuBft2989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_360:142367..143330+ (Ectocarpus subulatus male Bft15b)
ATGCATTGGGTCCAGCACATCAAGGAACCACAAGATGGGTCCAGCACATC
AAGGAACCACAAGATGGGGCACATCATCGCGCTCGACGTCGTTCTGATGA
GCATGCTGGTAGGGTTTACCCTCACGGCTCTCAGCCATATCAGCGCCGCG
TGGAGATTAAGGAAAGACTTCTTCTTCTCTGTGAGGTCCCCACTCCTGGC
GACGACGTCGGGCCTCGTCGGTGTGGTTCTTGGAGCCTTCGCGGTGGCGC
GTCTCATCGTGATCCCTGATAAACTCGTGGTGCACTCCATTTCGTTGATA
ATCTTCGTGCCCTTGATGGAGCTCGGGTTCCTTGGGCCCTACGTGATGCG
GGGTATCCGGCTCCTCGTCATGTACAACCCTGCTACCCGGACGCACTGGG
GACGATTCTTTACCAGTGAACTCGCCGTGGTCAAGATATTGCTGGTTGCC
TTCGGAATTGTCGAGGTCATCGCCTGGTCCGCGGTACTGCTCTTTGGCCT
GGAAACGTGA back to top
|