EsuBft2871_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2871_3a-0001
Unique Name	EsuBft2871_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:614169..617536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2871_3
Protein domains	Coil
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Nb exon	8
Length	221
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2871_3a	EsuBft2871_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 614169..617536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2871_3a-0001	EsuBft2871_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 614169..617514 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2871_3a-0001-exon	agat-exon-64091	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 614169..614465 +
EsuBft2871_3a-0001-exon	EsuBft2871_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 614538..614581 +
EsuBft2871_3a-0001-exon	agat-exon-64094	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 614715..615096 +
EsuBft2871_3a-0001-exon	agat-exon-64089	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 615650..615826 +
EsuBft2871_3a-0001-exon	agat-exon-64093	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 615870..616223 +
EsuBft2871_3a-0001-exon	agat-exon-64090	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 616289..616575 +
EsuBft2871_3a-0001-exon	agat-exon-64088	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 616656..617012 +
EsuBft2871_3a-0001-exon	agat-exon-64092	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 617223..617536 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2871_3a-0001-cds	EsuBft2871_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 614169..614465 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2871_3a-0001-exon	agat-three_prime_utr-11480	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 617515..617536 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:614169..617536+
coding sequence from alignment at Scaffold_189:614169..617536+

spliced messenger RNA

>EsuBft2871_3a-0001 ID=EsuBft2871_3a-0001|Name=EsuBft2871_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2212bp|location=Sequence derived from alignment at Scaffold_189:614169..617536+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGAAACAGAGAAGGTAAGGAGACAAGAGGCGAGGGCGACGGAGGA
AAAGAAAGGACCGAGCGGGGGAGGCGAGCAAGCAAGTCAGAAGGAGTCCG
AGAAGAAGCGGAAGGCGAACGATAGAGTGCGCAAAATCCCCGATAGGGTA
AAGCCCAAGCTGAGAGTCGGGTCGTGGAAGGTGTGCGGGTTCGTAAGGAG
TGAGTGCAAGCGGTTGGAAATAGCGGACCAAGTAGAACAAAGCGATCTAG
ATGTAGTGGGGATCCAAGAGACGTGGGAATTGAAGGATGGGGACGTGGGG
GGAGTCGGATTCCTGGTTAAGGAACACTTGTTTGACTTGGTGAGAACTTT
GGACAAATTGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGTGGATTAGTCAGCAGTGGGAAGGGAAAAAGGGA
AGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCTCGGAGAATGAAG
CTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGGCCCAAAAAGAA
GAGACATCGCGCTATTACAAGATCGTTGACAACCAGAGCAAGAGCGATGG
TAAAGCCCTGCGGGACTCCGGAGCCGGCACTGCTGAGAGTGGCTCGGAGG
ACGAAGTAGAGAAGAATACCAAGGACAAAGTTCTGACCGCGATAGTGGAC
GCGAAGGCTGCCGCGAGGCATGACTCGGAGGAGACCAAGCAGAAGAAAGC
CGACCAGGCGGCCTCGCACTCCGCGATGGGGATGTGGGCCATCAACCAGG
GCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCCAAGAAGCT
NGGGCCATCAACCAGGGCAACGCCCGATGCGGGCCGGGCGCAAAGGCTAC
ATCATTCGAAGAAGCTGTTGCCGCCGACAACAACGCGTTGGGTTACCGCT
CCGGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGC
AGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGC
CAGCGGTCGATCGAGCCCGACCATGAGTACGGGCGGGCTAGACGACGACT
TCTCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACCGCTTGGCGAC
TTGGTGAAGCACATGGGGTCGCTGACCATTCCGATGCTTGCGGAAAGTGC
CGGGGCGGATTACTTCCTCGACACGGGCTTCACGACNGACGACGACTTAT
CGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACTGCCTGGCGAATTG
GCGAAGCACATGGGGTCGCTGAGCATTTCGACGCTTGCGCAAAGTGCCGG
GGTCACCACGGAGGAGGCGGACTACTTCCTCAACACGGGCTTCACGCCCG
ACGAAGTTCAGCCGGAAAGGGCCGTGGCCATGATGGTGGTACTACTCGAC
GCAAGGCTTTGTATCCAGCGCGACGGAGACAGCGTCCAGCAGTTTGACGA
GTCGGTCATGTTTAAACTGCTCGAGCTCTACGGAATGGAAACGATGGACT
TCCGCAGCCTGCCGGAATCGAATAGGTTTCACAGCGGATGGCCCATAGAA
CGTGTTACGCCGGACAAGGTGCTTCAGGTTACGAAGCGGGTGGCGAGGTT
GTTGGTGCTTGGCGCCGGCGTGACGAACTCCGGGCTGTCCGCCGCCGGTC
AGACATCCATCCCCGGTTCTGCAACAGTGGGGGATGCGCGCGCCATGTCA
GGCATGGACCCTTCAGGGGCGGCGAGTGGGCCTTCGGGAAACCGTGGAAG
GAAGCCCCGTGCCAAGACCAATAAGCTCGCCGAGGATGGGCTAGACAGCT
TCATAGAGCGACAGGTGGCTGACGCTCGGGCACTTGCCGATCAGAAACGT
GAAGAGGACGAGAGGAGGCGGGCGGCGGAAGCTAAACGAGAAGTAGGGAG
GAGGCAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAATGCGGGAAG
ATGAAAGGAAACACGACAGACAAGAGCGTGAAGTGGAGAGGGCGGCTGCA
TGGGCAGAGCAAAAGGGAGATCGTGATCGCCAAATCAGGATGATGCAACT
CCAGGTAGACCTGGCGAAGGCGAAGGGCAACAATAACTAGCTAACTGGTT
GGGGTTGCTGTT

protein sequence of EsuBft2871_3a-0001

>EsuBft2871_3 ID=EsuBft2871_3|Name=EsuBft2871_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=729bp
MIETEKVRRQEARATEEKKGPSGGGEQASQKESEKKRKANDRVRKIPDRV
KPKLRVGSWKVCGFVRSECKRLEIADQVEQSDLDVVGIQETWELKDGDVG
GVGFLVKEHLFDLVRTLDKLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXGGLVSSGKGKREVLAGHYKRLGVPSENEAFDQVFKKEVDAWAQKE
ETSRYYKIVDNQSKSDGKALRDSGAGTAESGSEDEVEKNTKDKVLTAIVD
AKAAARHDSEETKQKKADQAASHSAMGMWAINQGNARCGPGAKATSFQEA
XAINQGNARCGPGAKATSFEEAVAADNNALGYRSGAAAGGRASGRVSPAS
SIGGARPASEASAGGAASGRSSPTMSTGGLDDDFSPAGSGPSRKVPPLGD
LVKHMGSLTIPMLAESAGADYFLDTGFTTDDDLSPAGSGPSRKVPLPGEL
AKHMGSLSISTLAQSAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLD
ARLCIQRDGDSVQQFDESVMFKLLELYGMETMDFRSLPESNRFHSGWPIE
RVTPDKVLQVTKRVARLLVLGAGVTNSGLSAAGQTSIPGSATVGDARAMS
GMDPSGAASGPSGNRGRKPRAKTNKLAEDGLDSFIERQVADARALADQKR
EEDERRRAAEAKREVGRRQELLDMMAHERAMREDERKHDRQEREVERAAA
WAEQKGDRDRQIRMMQLQVDLAKAKGNNN

mRNA from alignment at Scaffold_189:614169..617536+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2871_3a-0001 ID=EsuBft2871_3a-0001|Name=EsuBft2871_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3368bp|location=Sequence derived from alignment at Scaffold_189:614169..617536+ (Ectocarpus subulatus male Bft15b)
ATGATAGAAACAGAGAAGGTAAGGAGACAAGAGGCGAGGGCGACGGAGGA
AAAGAAAGGACCGAGCGGGGGAGGCGAGCAAGCAAGTCAGAAGGAGTCCG
AGAAGAAGCGGAAGGCGAACGATAGAGTGCGCAAAATCCCCGATAGGGTA
AAGCCCAAGCTGAGAGTCGGGTCGTGGAAGGTGTGCGGGTTCGTAAGGAG
TGAGTGCAAGCGGTTGGAAATAGCGGACCAAGTAGAACAAAGCGATCTAG
ATGTAGTGGGGATCCAAGAGACGTGGGAATTGAAGGATGGGGACGTGGTA
AGCAAACTAGGGAAATACCGGTGGGTAGGGAAGGCAAGAAAAGGCTTAGA
CCCGAAGAAAAGGGGGCAGGGGGGAGTCGGATTCCTGGTTAAGGAACACT
TGTTTGACTTGGTGTAAGTAGTGGTGAAAACGGAGTTCGAGGAAAGGCTA
TGGCTTAAGATACCTGGGGAGCGGGGTGAGAAATATTTGTTTCTAGGGAA
CGTATACGTCCCACCGTCGTCGAAGAAAGTCGCAAGCAAGGCGCAGGAGA
ACTTTGGACAAATTGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGTGGATTAGTCAGCAGTGGGAAGGGAAAA
AGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCTCGGAGAA
TGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGGCCCAAA
AAGAAGAGACATCGCGCTATTACAAGATCGTTGACAACCAGAGCAAGAGC
GATGGTAAAGCCCTGCGGGACTCCGGAGCCGGCACTGCTGAGAGTGGCTC
GGAGGACGAAGTAGAGAAGAATACCAAGGTCCAGCTGGCGAGGGTCCAGA
GCCAGTGAGCTATCTCTACCTTTTGTGACTGAGTGTACACGATCATGGCA
CAGTCCAAACAAGACGGGCACGAATATCTGCACATGGAGAATCCACAATC
CATAGACTATCGTGAAACACCTGCGCTGTCCCGACCGAAGAAAATGCCTG
CCGGCGTCACCAACGTTACACTTGCAGATAAAAGGGGTACGCACAGGGTT
AGCCGTAAGTCCAACTTAAAATGCGCAGCATGACAAAAGAAAGGCAGAAG
TAGATAGACAGCACGAAAGCCCGAGTGCTACACGCCAGGCGACGCAAAAC
GTGCAGAGAGTTAGCTTGCTGAGACGGTCCTTCACCCACAAAATCAAAAC
AGCGTCGAGGTTTTCACTCCCACCTTGTATTGTTTCGGGGCGTGACGTAG
CAGTGTTGACACGGAAGTACAAAACAGACGATGCATATAGCTATCGCCGA
CGCTAGTGATGCAATTTGTACGTCGTAGAGCTGACGAGCTGCCGCGCCGC
TGTTGCTTCTTGCCCGCGATGTGCCGCACAGGACAAAGTTCTGACCGCGA
TAGTGGACGCGAAGGCTGCCGCGAGGCATGACTCGGAGGAGACCAAGCAG
AAGAAAGCCGACCAGGCGGCCTCGCACTCCGCGATGGGGATGTGGGCCAT
CAACCAGGGCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCC
AAGAAGCTGTTGCCGCCGACAACATCGCGTTGGGTTCCCGCTCCGGTGCA
GNGGGCCATCAACCAGGGCAACGCCCGATGCGGGCCGGGCGCAAAGGCTA
CATCATTCGAAGAAGCTGTTGCCGCCGACAACAACGCGTTGGGTTACCGC
TCCGGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAG
CAGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTG
CCAGCGGTCGATCGAGCCCGACCATGAGTACGGGCGGGCTAGACGACGAC
TTCTCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACCGCTTGGCGA
CTTGGTGAAGCACATGGGGTCGCTGACCATTCCGATGCTTGCGGAAAGTG
CCGGGGTCACCACGGAGGAGGCGGANGCATTTCGACGCTTGCGCAAAGTG
CCGGGGTCACCACGGAGGAGGCGGATTACTTCCTCGACACGGGCTTCACG
ACNGACGACGACTTATCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCC
ACTGCCTGGCGAATTGGCGAAGCACATGGGGTCGCTGAGCATTTCGACGC
TTGCGCAAAGTGCCGGGGTCACCACGGAGGAGGCGGACTACTTCCTCAAC
ACGGGCTTCACGCCCGACGAAGTTCAGCCGGAAAGGGCCGTGGCCATGAT
GGTGGTACTACTCGACGCAAGGCTTTGTATCCAGCGCGACGGAGACAGCG
TCCAGCAGTACATGGATCGTCTTGGTGAAGAGGATTGTGAGCTGCCCGGG
TTTGATGGGTTTGACGAGTCGGTCATGTTNTTGATAGGTTTGACGAGTCG
GTCATGTTTAAACTGCTCGAGCTCTACGGAATGGAAACGATGGACTTCCG
CAGCCTGCCGGAATCGAATAGGTTTCACAGCGGATGGCCCATAGAACGTG
TTACGCCGGACAAGGTGCTTCAGGTTACGAAGCGGGTGGCGAGGTTGTTG
GTGCTTGGCGCCGGCGTGACGAACTCCGGGCTGTCCGCCGCCGGTCAGAC
ATCCATCCCCGGTTCTGCAACAGTGGGGGATGCGCGCGCCATGTCAGGCA
TGGACCCTTCAGGGGCGGCGAGTGGGCCTTCGGGAAACCGTGGAAGGAAG
CCCCGTGCCAAGACCAATAAGCTCGCCGAGGATGGGCTAGACAGGTAAAA
CTGTTCGTCGACTCTGCCCATGTCTTGATTCTCGCAACTCCTTCGTGTGG
TAGACGCTGTGCATTATTGTTAGATTATTTTGGTGGACGTAACCTGTACC
AGAGAAGTGTCATCGCAGCATTATTGTTAGCTACTCCATCAGGGAGGTGC
CAGAGCTTACCCTACCCTGGTTCCTCTCTTGCGTCGTTGTGCCACGTGTC
CCAGCTTCATAGAGCGACAGGTGGCTGACGCTCGGGCACTTGCCGATCAG
AAACGTGAAGAGGACGAGAGGAGGCGGGCGGCGGAAGCTAAACGAGAAGT
AGGGAGGAGGCAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAATGC
GGGAAGATGAAAGGAAACACGACAGACAAGAGCGTGAAGTGGAGAGGGCG
GCTGCATGGGCAGAGCAAAAGGGAGATCGTGATCGCCAAATCAGGATGAT
GCAACTCCAGGTAGACCTGGCGAAGGCGAAGGGCAACAATAACTAGCTAA
CTGGTTGGGGTTGCTGTT

Coding sequence (CDS) from alignment at Scaffold_189:614169..617536+

>EsuBft2871_3a-0001 ID=EsuBft2871_3a-0001|Name=EsuBft2871_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2190bp|location=Sequence derived from alignment at Scaffold_189:614169..617536+ (Ectocarpus subulatus male Bft15b)
ATGATAGAAACAGAGAAGGTAAGGAGACAAGAGGCGAGGGCGACGGAGGA
AAAGAAAGGACCGAGCGGGGGAGGCGAGCAAGCAAGTCAGAAGGAGTCCG
AGAAGAAGCGGAAGGCGAACGATAGAGTGCGCAAAATCCCCGATAGGGTA
AAGCCCAAGCTGAGAGTCGGGTCGTGGAAGGTGTGCGGGTTCGTAAGGAG
TGAGTGCAAGCGGTTGGAAATAGCGGACCAAGTAGAACAAAGCGATCTAG
ATGTAGTGGGGATCCAAGAGACGTGGGAATTGAAGGATGGGGACGTGGGG
GGAGTCGGATTCCTGGTTAAGGAACACTTGTTTGACTTGGTGAGAACTTT
GGACAAATTGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGTGGATTAGTCAGCAGTGGGAAGGGAAAAAGGGA
AGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCTCGGAGAATGAAG
CTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGGCCCAAAAAGAA
GAGACATCGCGCTATTACAAGATCGTTGACAACCAGAGCAAGAGCGATGG
TAAAGCCCTGCGGGACTCCGGAGCCGGCACTGCTGAGAGTGGCTCGGAGG
ACGAAGTAGAGAAGAATACCAAGGACAAAGTTCTGACCGCGATAGTGGAC
GCGAAGGCTGCCGCGAGGCATGACTCGGAGGAGACCAAGCAGAAGAAAGC
CGACCAGGCGGCCTCGCACTCCGCGATGGGGATGTGGGCCATCAACCAGG
GCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCCAAGAAGCT
NGGGCCATCAACCAGGGCAACGCCCGATGCGGGCCGGGCGCAAAGGCTAC
ATCATTCGAAGAAGCTGTTGCCGCCGACAACAACGCGTTGGGTTACCGCT
CCGGTGCAGCGGCCGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGC
AGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGC
CAGCGGTCGATCGAGCCCGACCATGAGTACGGGCGGGCTAGACGACGACT
TCTCGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACCGCTTGGCGAC
TTGGTGAAGCACATGGGGTCGCTGACCATTCCGATGCTTGCGGAAAGTGC
CGGGGCGGATTACTTCCTCGACACGGGCTTCACGACNGACGACGACTTAT
CGCCCGCGGGGAGCGGGCCATCGAGGAAGGTTCCACTGCCTGGCGAATTG
GCGAAGCACATGGGGTCGCTGAGCATTTCGACGCTTGCGCAAAGTGCCGG
GGTCACCACGGAGGAGGCGGACTACTTCCTCAACACGGGCTTCACGCCCG
ACGAAGTTCAGCCGGAAAGGGCCGTGGCCATGATGGTGGTACTACTCGAC
GCAAGGCTTTGTATCCAGCGCGACGGAGACAGCGTCCAGCAGTTTGACGA
GTCGGTCATGTTTAAACTGCTCGAGCTCTACGGAATGGAAACGATGGACT
TCCGCAGCCTGCCGGAATCGAATAGGTTTCACAGCGGATGGCCCATAGAA
CGTGTTACGCCGGACAAGGTGCTTCAGGTTACGAAGCGGGTGGCGAGGTT
GTTGGTGCTTGGCGCCGGCGTGACGAACTCCGGGCTGTCCGCCGCCGGTC
AGACATCCATCCCCGGTTCTGCAACAGTGGGGGATGCGCGCGCCATGTCA
GGCATGGACCCTTCAGGGGCGGCGAGTGGGCCTTCGGGAAACCGTGGAAG
GAAGCCCCGTGCCAAGACCAATAAGCTCGCCGAGGATGGGCTAGACAGCT
TCATAGAGCGACAGGTGGCTGACGCTCGGGCACTTGCCGATCAGAAACGT
GAAGAGGACGAGAGGAGGCGGGCGGCGGAAGCTAAACGAGAAGTAGGGAG
GAGGCAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAATGCGGGAAG
ATGAAAGGAAACACGACAGACAAGAGCGTGAAGTGGAGAGGGCGGCTGCA
TGGGCAGAGCAAAAGGGAGATCGTGATCGCCAAATCAGGATGATGCAACT
CCAGGTAGACCTGGCGAAGGCGAAGGGCAACAATAACTAG