EsuBft2787_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2787_3a-0001
Unique NameEsuBft2787_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:309691..312235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2787_3
Protein domainsIPR000048
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Length123
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_3aEsuBft2787_3aEctocarpus subulatus male Bft15bgeneScaffold_360 309691..312235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_3a-0001EsuBft2787_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 309691..312235 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_3a-0001-exonagat-exon-105129Ectocarpus subulatus male Bft15bexonScaffold_360 309691..309786 +
EsuBft2787_3a-0001-exonagat-exon-105130Ectocarpus subulatus male Bft15bexonScaffold_360 309837..310302 +
EsuBft2787_3a-0001-exonagat-exon-105134Ectocarpus subulatus male Bft15bexonScaffold_360 310350..310715 +
EsuBft2787_3a-0001-exonagat-exon-105133Ectocarpus subulatus male Bft15bexonScaffold_360 311058..311072 +
EsuBft2787_3a-0001-exonagat-exon-105131Ectocarpus subulatus male Bft15bexonScaffold_360 311411..311508 +
EsuBft2787_3a-0001-exonEsuBft2787_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 311980..312138 +
EsuBft2787_3a-0001-exonagat-exon-105132Ectocarpus subulatus male Bft15bexonScaffold_360 312197..312235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2787_3a-0001-cdsEsuBft2787_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 309691..309786 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2787_3a-0001 ID=EsuBft2787_3a-0001|Name=EsuBft2787_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_360:309691..312235+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGGGAGTGGAGGGAGGGGCGGGGGAAACGCTTCCCGCAGGAAA
GGAGGGCGGCGCAGGAGACACGCTTCCCGCGGGGAGCGAGGATGGGCCCG
CGGCGGCGGCGGTGGCGGCGGTGGCGGCGGCGCAAAGGCTGGCGCTGAGG
GTGGAGGGAGAGGCTGGGGGGACGCTACCCGCGATCAGCGAGGATGGGGC
AGGGAGGAACGCGATGGCTACTATCGCCCGGCCCGCGATGATGGCCACGG
CGTCGGTACGGCACGCGGTGCCGGCGGTGCCGGCGGTGCCGGCGGCACAA
GGGCGGGCGCGAAGGGTGGAGGGGGAGGCGGGGGAAACGCTACCCGCGAT
TGGCCAGGACGGGACCGGGGCGAAACCTTTAGGCACTACGGCCCACAACC
CGGTGATGCCGTCGGTGCGTCACGCCGTGGCGGTGGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGGGGTGGTGGTGGTGGTGGCGGAGGCCACATATCC
CCGTTGCGAGGTGGCAGGGCACGAGTTCCCACCCACGCTGTTCCGAGCAA
ACGCGGTGGCGGCACACGGCGACAGGGGTCACTTCCAGTCGGCGCAAGGT
GGAAGTCACGGCCTTGGGGGAGGGACGGCAAACAGGGGAGGGCCGGACAT
GGGGGTGGATGCGGCGGGGCCCATGGCGCGGGCGGGGCGGACGGGTTACC
CAGCAAGGGGCTTCGGGGTGGAGGGTGCGGCGGTGACACCCAACACCACG
GGAACCCCTGGGGTGGGGCCGCGTGCGTTGGCGGGGATTGTGGGCAACGG
CCGATGGTCCGACACCCGTTTGGTGGGTGTTTACTTGGCGGTGGTTGCGC
TTTGGGGCTATGCATGCATCGTGCGCGGCGTGTCCGAGCTGCTCTTGTGC
CTGACGCCGTGCTTTCGTGGAGTCCCGGGCCGCTCGGGAGAAGCGGCAGC
CGCGGCGGCGGTGGCGGCGGCGCTCGAGGGGGCGGTGGCTAGCGTGGTGG
AGGCAGCAGACGCAGCAGCGCGGGCGCAGGCGGCCCGGGAGGCGGTGATG
AGGGGCCGGGTGGGGAGGGAGTTCGCGCGCGGAGAACGCACCCGAATCAC
GTCGATGGTTGTCCTGGTGCAGGCCTTATACCGGGGGAGGGCTGCCCGCC
GAGAGGCGGATGTGCTGCGGGCGGCGATTCTGACGAGGGCGAGGGCGAAG
CGGCAGCAGCAGCGCAGGAGCAGGCGGCGCGGGAGGTAA
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protein sequence of EsuBft2787_3a-0001

>EsuBft2787_3 ID=EsuBft2787_3|Name=EsuBft2787_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=412bp
MARGVEGGAGETLPAGKEGGAGDTLPAGSEDGPAAAAVAAVAAAQRLALR
VEGEAGGTLPAISEDGAGRNAMATIARPAMMATASVRHAVPAVPAVPAAQ
GRARRVEGEAGETLPAIGQDGTGAKPLGTTAHNPVMPSVRHAVAVAAAAA
AAAAAGVVVVVAEATYPRCEVAGHEFPPTLFRANAVAAHGDRGHFQSAQG
GSHGLGGGTANRGGPDMGVDAAGPMARAGRTGYPARGFGVEGAAVTPNTT
GTPGVGPRALAGIVGNGRWSDTRLVGVYLAVVALWGYACIVRGVSELLLC
LTPCFRGVPGRSGEAAAAAAVAAALEGAVASVVEAADAAARAQAAREAVM
RGRVGREFARGERTRITSMVVLVQALYRGRAARREADVLRAAILTRARAK
RQQQRRSRRRGR
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mRNA from alignment at Scaffold_360:309691..312235+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2787_3a-0001 ID=EsuBft2787_3a-0001|Name=EsuBft2787_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2545bp|location=Sequence derived from alignment at Scaffold_360:309691..312235+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGGGGAGTGGAGGGAGGGGCGGGGGAAACGCTTCCCGCAGGAAA
GGAGGGCGGCGCAGGAGACACGCTTCCCGCGGGGAGCGAGGATGGGGTAG
GGACGAAAGCCGGGGCAGGTACCCCCCCCCCCCNCCAGCGGTGCAGCCCG
CGGCGGCGGCGGTGGCGGCGGTGGCGGCGGCGCAAAGGCTGGCGCTGAGG
GTGGAGGGAGAGGCTGGGGGGACGCTACCCGCGATCAGCGAGGATGGGGC
AGGGAGGAACGCGATGGCTACTATCGCCCGGCCCGCGATGATGGCCACGG
CGTCGGTACGGCACGCGGTGCCGGCGGTGCCGGCGGTGCCGGCGGCACAA
GGGCGGGCGCGAAGGGTGGAGGGGGAGGCGGGGGAAACGCTACCCGCGAT
TGGCCAGGACGGGACCGGGGCGAAACCTTTAGGCACTACGGCCCACAACC
CGGTGATGCCGTCGGTGCGTCACGCCGTGGCGGTGGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGGGGTGGTGGTGGTGGTGGCGGAGGCCACATATCC
CCGTTGCGAGGTGGCAGGGCACGAGTTCCCACCCACGCTGTTCCGAGCAA
ACGCGGTGGCGGGTACAGCAGTTCCCGGGCGGGGCCGACGTTGCACGGAC
CGGGAATAGCACACGGCGACAGGGGTCACTTCCAGTCGGCGCAAGGTGGA
AGTCACGGCCTTGGGGGAGGGACGGCAAACAGGGGAGGGCCGGACATGGG
GGTGGATGCGGCGGGGCCCATGGCGCGGGCGGGGCGGACGGGTTACCCAG
CAAGGGGCTTCGGGGTGGAGGGTGCGGCGGTGACACCCAACACCACGGGA
ACCCCTGGGGTGGGGCCGCGTGCGTTGGCGGGGATTGTGGGCAACGGCCG
ATGGTCCGACACCCGTTTGGTGGGTGTTTACTTGGCGGTGGTTGCGCTTT
GGGGCTATGCATGCATCGTGCGCGGCGTGTCCGAGCTGCTCTTGTGCCTG
ACGCCGTGCTTTCGTGGAGTCCCGGGTAGGGTAGTGTTGCTTTCGCGAGG
CGGAAGAACGTCCTATCCCGAAAAGACAAGGAAATTGAGCAGAGGTTGCG
GGGTGGTTTGCAGTATTGCTATTTTTACTCTCGCGCTCTGCCCGAGAGAA
GTACGGCTGCTGTCGTGAGTATGCTTACCTCATTGACTCGGCGACGCAAG
AACAACGCGATGTCATCCTTATCCTTTCATCATTTTCCACCCTGCAAGTC
ATTACTGAACGTCCTTCCTCTCCTGTTGCATCGTGCCGCTTTCGGGGACC
CCGTTCGGCATACATGCACGTCGCGCCAATGCCTCGGCAGTCCGAGGGTA
GGAACACCCGAATGCAGGCCGCTCGGGAGAAGGTACGCCTGCCTAATAGC
AGACAGCGGTAGGCCCCTACCATCGCAATATATACACCGATGGTGTAGTC
ACGATAGCTAAATATACAAGATCGCAGATGGCTGGGTCTTGTGCTTCCCT
TTGTTTTTGTTTCAGTTTTGGGGACGCAATATCAAGAATGTTTGGACTAG
ATTCCCATTTGTGAGCTCGATGGCAAGTGTCAGACGCAATCGAACGCCAA
TGGTGGAAAAGGAGCCTGTGTTCCGCCCCTTGTTTATCGAGTATCATACA
ACCTGGCAATCAAACGCCGTGCCTCTGGTACTCTCACGTGCGGGTGCCGC
CTTTCAGAGGGAGAGGGCAGCGGCAGCCGCGGCGGCGGTGGCGGCGGCGC
TCGAGGGGGCGGTGGCTAGCGTGGTGGAGGCAGCAGACGCAGCAGCGCGG
GCGCAGGCGGCCCGGGAGGTAAGGGGCCTTTTATTTCGCCACTGTCGACG
ATCAGGAGTAACAAGGGGGGGGGGTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGCAGTTGTTGGTTTTGGAAGGGGACGGTGTGGGTGGACCCGA
CGGGCTGTCGAGCGGTTGACACGGGTGTCTCCTAAGGCTGACGCGTTGAC
TAATGCACGATTGATCACCCGCAACGTTCAGTGGTAGATGTATCGCGAGG
TTTGTGGACAGCTCGCACTGACCCAGTGCGTGTGCGAGTACACCCATTGA
GAGTTTGCTGCCCACGGCATCACCCCACTTGTACCGCCCCGTCCCATGGC
AACAACAACGACCTCACCTGCACTCTACCGCCGCACTACACCAGACCATG
TATACTGTATGTGTCGCCGATCATCTTCCTTTGTGCGAAAACTTCCCGTG
TTCTGAATCGACCGTGCACTGCTGTCGGTACGCCTGCAGGCGGTGATGAG
GGGCCGGGTGGGGAGGGAGTTCGCGCGCGGAGAACGCACCCGAATCACGT
CGATGGTTGTCCTGGTGCAGGCCTTATACCGGGGGAGGGCTGCCCGCCGA
GAGGCGGATGTGCTGCGGGCGGCGATTCTGACGAGGGCGAGGGCGAAGGT
TGCCGTATCTGTGCAGCGGGCATTCCGGGCTCGGCGGCGGAGCAGGGCGG
AGGCAGCGGCAGCAGCAGCGCAGGAGCAGGCGGCGCGGGAGGTAA
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Coding sequence (CDS) from alignment at Scaffold_360:309691..312235+

>EsuBft2787_3a-0001 ID=EsuBft2787_3a-0001|Name=EsuBft2787_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1239bp|location=Sequence derived from alignment at Scaffold_360:309691..312235+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGGGGAGTGGAGGGAGGGGCGGGGGAAACGCTTCCCGCAGGAAA
GGAGGGCGGCGCAGGAGACACGCTTCCCGCGGGGAGCGAGGATGGGCCCG
CGGCGGCGGCGGTGGCGGCGGTGGCGGCGGCGCAAAGGCTGGCGCTGAGG
GTGGAGGGAGAGGCTGGGGGGACGCTACCCGCGATCAGCGAGGATGGGGC
AGGGAGGAACGCGATGGCTACTATCGCCCGGCCCGCGATGATGGCCACGG
CGTCGGTACGGCACGCGGTGCCGGCGGTGCCGGCGGTGCCGGCGGCACAA
GGGCGGGCGCGAAGGGTGGAGGGGGAGGCGGGGGAAACGCTACCCGCGAT
TGGCCAGGACGGGACCGGGGCGAAACCTTTAGGCACTACGGCCCACAACC
CGGTGATGCCGTCGGTGCGTCACGCCGTGGCGGTGGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGGGGTGGTGGTGGTGGTGGCGGAGGCCACATATCC
CCGTTGCGAGGTGGCAGGGCACGAGTTCCCACCCACGCTGTTCCGAGCAA
ACGCGGTGGCGGCACACGGCGACAGGGGTCACTTCCAGTCGGCGCAAGGT
GGAAGTCACGGCCTTGGGGGAGGGACGGCAAACAGGGGAGGGCCGGACAT
GGGGGTGGATGCGGCGGGGCCCATGGCGCGGGCGGGGCGGACGGGTTACC
CAGCAAGGGGCTTCGGGGTGGAGGGTGCGGCGGTGACACCCAACACCACG
GGAACCCCTGGGGTGGGGCCGCGTGCGTTGGCGGGGATTGTGGGCAACGG
CCGATGGTCCGACACCCGTTTGGTGGGTGTTTACTTGGCGGTGGTTGCGC
TTTGGGGCTATGCATGCATCGTGCGCGGCGTGTCCGAGCTGCTCTTGTGC
CTGACGCCGTGCTTTCGTGGAGTCCCGGGCCGCTCGGGAGAAGCGGCAGC
CGCGGCGGCGGTGGCGGCGGCGCTCGAGGGGGCGGTGGCTAGCGTGGTGG
AGGCAGCAGACGCAGCAGCGCGGGCGCAGGCGGCCCGGGAGGCGGTGATG
AGGGGCCGGGTGGGGAGGGAGTTCGCGCGCGGAGAACGCACCCGAATCAC
GTCGATGGTTGTCCTGGTGCAGGCCTTATACCGGGGGAGGGCTGCCCGCC
GAGAGGCGGATGTGCTGCGGGCGGCGATTCTGACGAGGGCGAGGGCGAAG
CGGCAGCAGCAGCGCAGGAGCAGGCGGCGCGGGAGGTAA
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