EsuBft2609_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2609_5a-0001
Unique NameEsuBft2609_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:48735..52707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra87462
ProteomeIdEsuBft2609_5
Protein domainsIPR013103
Protein domainsSSF56672
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl164328.Phyra87462|-
Length2029
Evalue7.12e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003676
GO0005515
EC3.1
GO0016779
GO0004518
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_5aEsuBft2609_5aEctocarpus subulatus male Bft15bgeneScaffold_373 48735..52707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_5a-0001-exonagat-exon-63978Ectocarpus subulatus male Bft15bexonScaffold_373 48735..50025 -
EsuBft2609_5a-0001-exonEsuBft2609_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 50473..50860 -
EsuBft2609_5a-0001-exonagat-exon-63977Ectocarpus subulatus male Bft15bexonScaffold_373 52358..52707 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_5a-0001-exonagat-three_prime_utr-10516Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 48735..49593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_5a-0001-cdsEsuBft2609_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 49594..50025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_5a-0001EsuBft2609_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 49594..52707 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2029bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
CACGGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGG
AGGGGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAG
GAGGTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGT
GGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCC
ACGAGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCC
CCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTG
GGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGT
TTTCATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGGCATGAACCTC
AATCCCTGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGA
GGTTTTTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTG
CTAAGGCTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGG
GGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAA
GGCGGACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGA
TTATCGTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGAT
TGCGAGGAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCT
TGGAGAGTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATG
CTGGGACTGTGAGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CGGCTGCTGCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCT
GCTGCTGTTGCTGCTGCTGCTGCTGGAACACNATCTAGGGCCGAAGCGAG
AGGATGAGGAGGGAGGGGAGTGGCCGGTGAGGAAGGCCATCGGCAGTATG
ATGTGGGTGTCGACGCTTTTACCGGCAAAGATGTTGCAAACGAACCGGCA
GCAGCCCCCCCCCCCGTCTCGCCAACAAACACCCCACCACTCACCTGTCC
AACCACACCACGGGTGGAGCCGGCCGCCAGCTGTTGTTGCCGCGGCTGCT
GCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCTGT
TGCTGCTGCTGCTGCTGGAACACGACCCGCCGCCAAAGCCACCGTTCCTC
CGCTGCTGAAACGGTCCGCGGGCGAGGTTGAACTTGCAATACTGATGTAC
ATGACCTTTCTCTCCACAGCAGCTGCATTGGTGCTGCTGCTCGGGAGGGG
GAGCAGCGGGAGGGCGTGGGCGTTCGTTGGGCACCAGCTACTGCTCATGC
TGGTACCGGCTGTGCCCTGTAAGGATGTGGTTGTGGCGGCTGCTCTGCTG
CTGCACTCCTCTCGTCACCTGCTGCTGGT
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protein sequence of EsuBft2609_5a-0001

>EsuBft2609_5 ID=EsuBft2609_5|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=390bp
MPACGKRGSMLNNPSFSPTSLVPSHPSTNKRSSCWRQQRRWIGPXXXXXX
XXXXXXXXXXXCPTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGE
CHKVVGRGGVEQARRGSTEEVTRWKLSAVLHVVEGLEARVVRELLSERAE
EVHAARQEAEDFLLGTVDLMLNSPDAFETALASHELSESPIGLRPSDVEA
PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPGMNL
NPWDVKQAYTHATLGKEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW
GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED
CEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTVRIX
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mRNA from alignment at Scaffold_373:48735..52707-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3973bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
GTATGTCGCGGATACCGGCGCTACTACCCACATGTTCGCGAACTCAGGTG
GGTTCGTTCATTACGAAGAGTGTGATCGACGTGTGCGCGTCGCCGCCGGA
GAAACCTTCCCTATCGTAGGGTATGGCGACGTGACGGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGTCGCCGACA
AGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGCCTGCCCGTCAGCAGCAC
GGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGGAGG
GGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAGGAG
GTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGTGGA
CCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCACG
AGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCCCCA
CCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTGGGA
ACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGTTTT
CATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGG
TGTTTTAGTTGGAAGACCAACCAGGAAGGGAAGATAGTTCAAAGCGCGTC
TGGTTGCTAGGGGGTTTTCGCAAATCCCGAACACCGATTATTTCCATTCG
TCTTCCCCTTGCCCCTCATCCGCATCCATAGAGCTGATGCTTGCGGTAGC
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCATGAACCTCAATCCC
TGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGAGGTTTT
TCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGG
CTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTAC
CACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAAGGCGGA
CCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCG
TGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAG
GAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCTTGGAGA
GTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATGCTGGGA
CTGTGAGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCTG
CTGCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCT
GTTGCTGCTGCTGCTGCTGGAACACNATCTAGGGCCGAAGCGAGAGGATG
AGGAGGGAGGGGAGTGGCCGGTGAGGAAGGCCATCGGCAGTATGATGTGG
GTGTCGACGCTTTTACCGGCAAAGATGTTGCAAACGAACCGGCAGCAGCC
CCCCCCCCCGTCTCGCCAACAAACACCCCACCACTCACCTGTCCAACCAC
ACCACGGGTGGAGCCGGCCGCCAGCTGTTGTTGCCGCGGCTGCTGCTGAA
ATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCTGTTGCTGC
TGCTGCTGCTGGAACACGACCCGCCGCCAAAGCCACCGTTCCTCCGCTGC
TGAAACGGTCCGCGGGCGAGGTTGAACTTGCAATACTGATGTACATGACC
TTTCTCTCCACAGCAGCTGCATTGGTGCTGCTGCTCGGGAGGGGGAGCAG
CGGGAGGGCGTGGGCGTTCGTTGGGCACCAGCTACTGCTCATGCTGGTAC
CGGCTGTGCCCTGTAAGGATGTGGTTGTGGCGGCTGCTCTGCTGCTGCAC
TCCTCTCGTCACCTGCTGCTGGT
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Coding sequence (CDS) from alignment at Scaffold_373:48735..52707-

>EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1170bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
CACGGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGG
AGGGGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAG
GAGGTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGT
GGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCC
ACGAGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCC
CCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTG
GGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGT
TTTCATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGGCATGAACCTC
AATCCCTGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGA
GGTTTTTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTG
CTAAGGCTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGG
GGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAA
GGCGGACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGA
TTATCGTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGAT
TGCGAGGAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCT
TGGAGAGTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATG
CTGGGACTGTGAGAATCTNN
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