EsuBft2475_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2475_6a-0001
Unique Name	EsuBft2475_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:193430..194379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2475_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	95
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2475_6a	EsuBft2475_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 193430..194379 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2475_6a-0001-exon	EsuBft2475_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 193430..194379 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2475_6a-0001-cds	EsuBft2475_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 193430..193594 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2475_6a-0001-exon	agat-three_prime_utr-9966	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 193595..194379 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2475_6a-0001	EsuBft2475_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 193430..193594 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:193430..194379+
coding sequence from alignment at Scaffold_100:193430..194379+

spliced messenger RNA

>EsuBft2475_6a-0001 ID=EsuBft2475_6a-0001|Name=EsuBft2475_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=950bp|location=Sequence derived from alignment at Scaffold_100:193430..194379+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCACCAGCTACGGGCATCTCCGTGCCTACCACCACTACTGTGAT
CCATGCGCAGAATGGGTGCTGCACCGTACCCCCAAATGTCAGCGGACACG
TGCGCGGGGTGAGTCAAAGTGAAAGGTTATGTGGTTTGGTAGCGGTTTGT
GTCGCACCACGATGATGGTTGTGCGTTCGAAATATTGACCGAACGAAGTG
TTATGCTTTGCAGAGGCAGAAAGTTGGGGTACGGCCTGTTACTGCTCTTC
TTTCAATTCCATCGTCAGTCGGTCGTGCTTAGACTGTATCTTGTTTTGGT
CGCGATAGAGGTGCATGACGAGGTGCGCGCGGGCTAGAGAGGACAGAAAC
CTACAGAGAGGTTGGGCAGATGGCTCCGCGGCCCTCTGCATCAATGCGTT
CGACAAAGCTCGCAGCTTGCGATCCCCTTCATCAACTGACACCAGAATTC
TGTACAACAGCAGTAGCCTCACGTATGAATAGCCGCAAATCCTCGATATG
CCAAGCTGTGTAAACTTTGCTGCTGCTGCAGGTCACGTCGGGTCGCTTTT
GTTGAGTACGCCATCGTTTGTCCATCCTGACATGATGAATATCAAATGTT
GATGCATCGCTCGGCGCCAGCTAGCTTGGCGCCAGCATTTTTTTTCCCCT
CTCTTTCGGGATATTTTTCGAGCATGTTATTTCTCCGATGTATTTCCATT
TTGCTCTTCGTTTTACCGTGCAACGACTTTATTAACAAGCAGACTGGCCG
TTCGTGCACCGACCGTTCAATTGATCTCAGTGCAACCTCAGACAAGCATC
GCAGGCACGCCCGTTCTACACCTCAAACGCTCGCCGTACCGTGTAGTCTA
CTGCTGATGCATAGACTAGTACCGCCGATCAAACCGACAATCGAATGATT
CCGAGATGCCTATGGTCACTCGTATATTCCGACGTGTTGGATAAACCGGG

protein sequence of EsuBft2475_6a-0001

>EsuBft2475_6 ID=EsuBft2475_6|Name=EsuBft2475_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MQPPATGISVPTTTTVIHAQNGCCTVPPNVSGHVRGVSQSERLCGLVAVC
VAPR

mRNA from alignment at Scaffold_100:193430..194379+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2475_6a-0001 ID=EsuBft2475_6a-0001|Name=EsuBft2475_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=950bp|location=Sequence derived from alignment at Scaffold_100:193430..194379+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCACCAGCTACGGGCATCTCCGTGCCTACCACCACTACTGTGAT
CCATGCGCAGAATGGGTGCTGCACCGTACCCCCAAATGTCAGCGGACACG
TGCGCGGGGTGAGTCAAAGTGAAAGGTTATGTGGTTTGGTAGCGGTTTGT
GTCGCACCACGATGATGGTTGTGCGTTCGAAATATTGACCGAACGAAGTG
TTATGCTTTGCAGAGGCAGAAAGTTGGGGTACGGCCTGTTACTGCTCTTC
TTTCAATTCCATCGTCAGTCGGTCGTGCTTAGACTGTATCTTGTTTTGGT
CGCGATAGAGGTGCATGACGAGGTGCGCGCGGGCTAGAGAGGACAGAAAC
CTACAGAGAGGTTGGGCAGATGGCTCCGCGGCCCTCTGCATCAATGCGTT
CGACAAAGCTCGCAGCTTGCGATCCCCTTCATCAACTGACACCAGAATTC
TGTACAACAGCAGTAGCCTCACGTATGAATAGCCGCAAATCCTCGATATG
CCAAGCTGTGTAAACTTTGCTGCTGCTGCAGGTCACGTCGGGTCGCTTTT
GTTGAGTACGCCATCGTTTGTCCATCCTGACATGATGAATATCAAATGTT
GATGCATCGCTCGGCGCCAGCTAGCTTGGCGCCAGCATTTTTTTTCCCCT
CTCTTTCGGGATATTTTTCGAGCATGTTATTTCTCCGATGTATTTCCATT
TTGCTCTTCGTTTTACCGTGCAACGACTTTATTAACAAGCAGACTGGCCG
TTCGTGCACCGACCGTTCAATTGATCTCAGTGCAACCTCAGACAAGCATC
GCAGGCACGCCCGTTCTACACCTCAAACGCTCGCCGTACCGTGTAGTCTA
CTGCTGATGCATAGACTAGTACCGCCGATCAAACCGACAATCGAATGATT
CCGAGATGCCTATGGTCACTCGTATATTCCGACGTGTTGGATAAACCGGG

Coding sequence (CDS) from alignment at Scaffold_100:193430..194379+

>EsuBft2475_6a-0001 ID=EsuBft2475_6a-0001|Name=EsuBft2475_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_100:193430..194379+ (Ectocarpus subulatus male Bft15b)
ATGCAGCCACCAGCTACGGGCATCTCCGTGCCTACCACCACTACTGTGAT
CCATGCGCAGAATGGGTGCTGCACCGTACCCCCAAATGTCAGCGGACACG
TGCGCGGGGTGAGTCAAAGTGAAAGGTTATGTGGTTTGGTAGCGGTTTGT
GTCGCACCACGATGA