EsuBft2475_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2475_5a-0001
Unique NameEsuBft2475_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:188116..188969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2475_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length85
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_5aEsuBft2475_5aEctocarpus subulatus male Bft15bgeneScaffold_100 188116..188969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_5a-0001-exonEsuBft2475_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 188116..188969 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_5a-0001-exonagat-three_prime_utr-9965Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 188116..188810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_5a-0001-cdsEsuBft2475_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 188811..188969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_5a-0001EsuBft2475_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 188811..188969 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2475_5a-0001 ID=EsuBft2475_5a-0001|Name=EsuBft2475_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=854bp|location=Sequence derived from alignment at Scaffold_100:188116..188969- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCAGATGCCTGCTAGGCTGTTTCTTCCTGCAAGCGGCTCCTTG
CGTGGCCAGGATTTTTTGGGGCTTGCTGCTTTCACGGATGCGTGTTCTTG
ACGCAAGCATCGGACAAGCGCACAGCTGGCGCTGTAACATCACTGAGAAC
GCTAGCTAGACCTGCCAGACTCACATACATCCAGGTCTATTGAGGAGATG
GACAAGCGGTAGAAGCGACGTTCAGTCCGTTCTTGGTCCAAAACTAGACA
TTCCGTAGTGCTCTCGGCTTCAACACACGTAGCCATTTGGCTACCCTGGC
AGGGTGGCCGAAAAACCACCCTGCCAGGGTACGCACCTTGTGAACGGCAG
AAGGGTGCACCGCCGGCAGGGTCTTTTATAGACACCCTGGACAGGGTCCA
CCCTGCCAGGGTGGCCCGAATTGCACCCTGTGAGCAAACTGCGGCAGCAA
TTTTGTGTGGTGTGCTGTTTTGAACTCTGTTTTTTCGTGGTTGTCGATAG
CTTGTGAGCATACGCCTCCGGGTTAATCGCGAACGATCCCGGTTTTTTTC
ATGCCATGTCGTCGCTCAATCGTACAGCACCAACGTCGACACGATTATCA
CGCGCATCCTCTGCACAGATCGACTCGGCATCCTGCCAACAGTCATTTCT
GCGTCAGGGTCGAATCCACGCAAAGAAGGATGTTAAGAATAATAACAGTG
TGCCCGATGCTCGTCACAAAACCCAAAAAACATCACGCAAATGTAATGGT
GGGGCTCACAACCCCAACTTGATTGCCACGCTTTCAACGGAATGTGAATG
TGCACGACATGTCCATGACGTGCACCAAGCAAATCAGGACGCATGGTGAG
CCAC
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protein sequence of EsuBft2475_5a-0001

>EsuBft2475_5 ID=EsuBft2475_5|Name=EsuBft2475_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MSTRCLLGCFFLQAAPCVARIFWGLLLSRMRVLDASIGQAHSWRCNITEN
AS
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mRNA from alignment at Scaffold_100:188116..188969-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2475_5a-0001 ID=EsuBft2475_5a-0001|Name=EsuBft2475_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=854bp|location=Sequence derived from alignment at Scaffold_100:188116..188969- (Ectocarpus subulatus male Bft15b)
ATGTCCACCAGATGCCTGCTAGGCTGTTTCTTCCTGCAAGCGGCTCCTTG
CGTGGCCAGGATTTTTTGGGGCTTGCTGCTTTCACGGATGCGTGTTCTTG
ACGCAAGCATCGGACAAGCGCACAGCTGGCGCTGTAACATCACTGAGAAC
GCTAGCTAGACCTGCCAGACTCACATACATCCAGGTCTATTGAGGAGATG
GACAAGCGGTAGAAGCGACGTTCAGTCCGTTCTTGGTCCAAAACTAGACA
TTCCGTAGTGCTCTCGGCTTCAACACACGTAGCCATTTGGCTACCCTGGC
AGGGTGGCCGAAAAACCACCCTGCCAGGGTACGCACCTTGTGAACGGCAG
AAGGGTGCACCGCCGGCAGGGTCTTTTATAGACACCCTGGACAGGGTCCA
CCCTGCCAGGGTGGCCCGAATTGCACCCTGTGAGCAAACTGCGGCAGCAA
TTTTGTGTGGTGTGCTGTTTTGAACTCTGTTTTTTCGTGGTTGTCGATAG
CTTGTGAGCATACGCCTCCGGGTTAATCGCGAACGATCCCGGTTTTTTTC
ATGCCATGTCGTCGCTCAATCGTACAGCACCAACGTCGACACGATTATCA
CGCGCATCCTCTGCACAGATCGACTCGGCATCCTGCCAACAGTCATTTCT
GCGTCAGGGTCGAATCCACGCAAAGAAGGATGTTAAGAATAATAACAGTG
TGCCCGATGCTCGTCACAAAACCCAAAAAACATCACGCAAATGTAATGGT
GGGGCTCACAACCCCAACTTGATTGCCACGCTTTCAACGGAATGTGAATG
TGCACGACATGTCCATGACGTGCACCAAGCAAATCAGGACGCATGGTGAG
CCAC
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Coding sequence (CDS) from alignment at Scaffold_100:188116..188969-

>EsuBft2475_5a-0001 ID=EsuBft2475_5a-0001|Name=EsuBft2475_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_100:188116..188969- (Ectocarpus subulatus male Bft15b)
ATGTCCACCAGATGCCTGCTAGGCTGTTTCTTCCTGCAAGCGGCTCCTTG
CGTGGCCAGGATTTTTTGGGGCTTGCTGCTTTCACGGATGCGTGTTCTTG
ACGCAAGCATCGGACAAGCGCACAGCTGGCGCTGTAACATCACTGAGAAC
GCTAGCTAG
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