EsuBft2475_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2475_4a-0001
Unique NameEsuBft2475_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:183747..184059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2475_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length31
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_4aEsuBft2475_4aEctocarpus subulatus male Bft15bgeneScaffold_100 183747..184059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_4a-0001-exonEsuBft2475_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 183747..184059 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_4a-0001-exonagat-five_prime_utr-6389Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 183747..183783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_4a-0001-cdsEsuBft2475_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 183784..184059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_4a-0001EsuBft2475_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 183784..184059 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2475_4a-0001 ID=EsuBft2475_4a-0001|Name=EsuBft2475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_100:183747..184059+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGATGGGAAACACCGGGGGGGGGAAATTGTGAGCATGAGGGTGCCAT
GTCGACAAGGTCTGGAAATTGATGGTGACGTTGACGTGGTCTTCGTCTTC
GGTGCAATATCTGCAGAAAACTATCACCTCTCTGAGATCGAGCGAGACCT
GGAAATATTGATATTGAAACATCCTTTCATACTTTGTGGGGTGGTAGTTT
TCGGGCCGGGCCGGGCGATCGTTCACGGGAACCCCGAACGATATCGCGGG
AAAGAGGAGGAACCTGAAAAGTGCCAGCACCGACTAGGGCGACCTAGGGA
CGGGTATTTGTGA
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protein sequence of EsuBft2475_4a-0001

>EsuBft2475_4 ID=EsuBft2475_4|Name=EsuBft2475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MRVPCRQGLEIDGDVDVVFVFGAISAENYHLSEIERDLEILILKHPFILC
GVVVFGPGRAIVHGNPERYRGKEEEPEKCQHRLGRPRDGYL
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mRNA from alignment at Scaffold_100:183747..184059+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2475_4a-0001 ID=EsuBft2475_4a-0001|Name=EsuBft2475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_100:183747..184059+ (Ectocarpus subulatus male Bft15b)
CCCCGATGGGAAACACCGGGGGGGGGAAATTGTGAGCATGAGGGTGCCAT
GTCGACAAGGTCTGGAAATTGATGGTGACGTTGACGTGGTCTTCGTCTTC
GGTGCAATATCTGCAGAAAACTATCACCTCTCTGAGATCGAGCGAGACCT
GGAAATATTGATATTGAAACATCCTTTCATACTTTGTGGGGTGGTAGTTT
TCGGGCCGGGCCGGGCGATCGTTCACGGGAACCCCGAACGATATCGCGGG
AAAGAGGAGGAACCTGAAAAGTGCCAGCACCGACTAGGGCGACCTAGGGA
CGGGTATTTGTGA
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Coding sequence (CDS) from alignment at Scaffold_100:183747..184059+

>EsuBft2475_4a-0001 ID=EsuBft2475_4a-0001|Name=EsuBft2475_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_100:183747..184059+ (Ectocarpus subulatus male Bft15b)
ATGAGGGTGCCATGTCGACAAGGTCTGGAAATTGATGGTGACGTTGACGT
GGTCTTCGTCTTCGGTGCAATATCTGCAGAAAACTATCACCTCTCTGAGA
TCGAGCGAGACCTGGAAATATTGATATTGAAACATCCTTTCATACTTTGT
GGGGTGGTAGTTTTCGGGCCGGGCCGGGCGATCGTTCACGGGAACCCCGA
ACGATATCGCGGGAAAGAGGAGGAACCTGAAAAGTGCCAGCACCGACTAG
GGCGACCTAGGGACGGGTATTTGTGA
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