EsuBft2475_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2475_3a-0001
Unique NameEsuBft2475_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:175901..180868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2475_3
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length257
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_3aEsuBft2475_3aEctocarpus subulatus male Bft15bgeneScaffold_100 175901..180868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_3a-0001EsuBft2475_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 177924..180868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_3a-0001-exonEsuBft2475_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 175901..177092 -
EsuBft2475_3a-0001-exonagat-exon-15320Ectocarpus subulatus male Bft15bexonScaffold_100 177168..178082 -
EsuBft2475_3a-0001-exonagat-exon-15321Ectocarpus subulatus male Bft15bexonScaffold_100 179115..179349 -
EsuBft2475_3a-0001-exonagat-exon-15319Ectocarpus subulatus male Bft15bexonScaffold_100 180636..180868 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_3a-0001-exonagat-three_prime_utr-9963Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 175901..177092 -
EsuBft2475_3a-0001-exonagat-three_prime_utr-9964Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 177168..177923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2475_3a-0001-cdsEsuBft2475_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 177924..178082 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2475_3a-0001 ID=EsuBft2475_3a-0001|Name=EsuBft2475_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2575bp|location=Sequence derived from alignment at Scaffold_100:175901..180868- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTGCTTTGCTGTTGGCAGGCAAGAGCGTGTGCTATCTGCGCCAT
CATTGTCCATGTGGGTGCCCTGTTGGTGTTCGGCTGGCTGTGGGTGTGGC
AATGGATTGCCTCTGTCTTAGCCTTCATCATGTGCGGCGTTCTCCTGTGC
ATGTACGATCGGTGCGCGTACATCACGGGCGGCATCTGCTTCGCCGTGGC
CGCCGTGTTCGACATCTTAGTGTTGGTGGGATGGATTGCCATTTACAACA
ATCTTCAAGACGACTACTACAACTACTACGACGACGACTACTACAACAAC
AATGACGGTGAGTGGGAGGACTGGAAGAACGTCATCCTCTGGTTCGCCCT
ACTCCCCTTCCTCGGAGCCCTTTCCTTGGGCCTCGGTGCCGTGTTTTCCT
TCACGTCGCTGTGCTTCTGGAAGGACGCCGGCTCCCCCGCGGCGGCGATG
GCGGTCACGACTGCGCACGTCCCGGCACCTCAGAACACCGTCAGCGCCAC
CTACCAGCCTCAGAACGAGCACCAGCACCACGAGCGGTATCACTACCAAC
AGCACAAGGCCGCGGATCCCCAACAGGCACCGCCTTCTGCGAGCGAAAGG
CCGCCGCCCCCGGGTTACTACCAGTGAGGTTATGACCTTCGCCGGCACGC
TCGGTGGCCGCTAGCTGCCACGTAAACGGGGGCGAGCCTGGCCGGCGAGA
ACGTAGCAAGGATTGATTGTCCCGGCACATGATGTGGTGAGGGATAGATT
CCGTCAGTCTCGTGGTTGCTTGTCCGTGTGGAAGCGGAGCATGAAAGCAC
TCCCGGTGTATCGATGTGAGCCCCCCACATGTTTGTAGGTATTGGATTGT
GTAGCAATGGCATGGCCGGTATCATCCCCAGAGGGGGGTGAATGCTCCAG
GCCCAGAAGGCGTGCAAGGGTAGAGTCACGCATTTTGCTGAGTGCTGATC
CTTGGATTATTTCGTTGTTTTGTTCTTTTTCGCATCCCGTGACGAGCGGG
AACGATGGGATCGTTTTGTTTTTTCTTGATCCATCCCATTCGCCCATTAA
GTCACCAGGGACGTTTCACTGCTGTATTGGTGGAAGGTCTGGCTTGGTTT
GGGCGGTTTTGTTGGAGGTCGGTTGTGTATGTGCTCAGTAGTTTTGTATC
GATTTTTCTTGGTCCTGGTATGTCATTCTTGTTTCTAAGAAAAAGGGTGC
ACCCTTTGTACAGTGCCAGCCCGCTCGCAAGAAACAATCTGGCAAGAGCT
TGAGCCTAGGTTTTTACTAATTAGAAGAGGGCCGTAACAAACTACACCCA
TTTGATGAAGTACCATATGGAGAAATAACAAATCCAATAGACCTTCCATC
GGTACGAAGCGTAAATATTTGGGGTAGGACGTGGACGTGGTACGAAGGAA
CGACCTTCGACCCCCGTGTCGCAGCTCGACAGCGATGACGACTTCGATTA
ACGGTGAGGAAATTGTTTGATCAGTCGTTGAAGACTGCCTTCTGGAAGCG
TTTTTGAGTTCTTAATTGCGGGAGATCAGCAGGTCGTGCGGCTGGCACGC
AAAACAACCAAATTTAGAAGCCACGCAAACTTGCCGCGTTTTGCTCGTGT
ACGATCAAGCATCATCACAAGCGTGGGCTTGCCTCTTTGTCTAGGGTGTA
GACGAGTCGAATCCAGCCTTAGGAGCATGGGCCAGACTACATGGAGCCGA
AAGACGATGACTGCGAGTGCTCGCGCATCCTCAACGTTTATAATATCGAC
TAAGAGGTGAGAGTTGGAGTGCACATGTACAACAGGTCGGGACCAATTTG
GCCATTGAGTCTCGAAGGGGAGTCCCTTTTTTTCCGCCCTCCGGAACGAG
AACGTTGTGCGTGCACACGATCGTGTAGTTCTGTTGTAGAGTACATGCAT
ACTGGTACTGTAGACATATGCGCAATAGTGGGCGCAATGCATATTTTTTT
CAAAGTCGGATAAAGGGCTGCCGGCGAATGTCAAATGAAGGTGGCGCGCA
GGGTAGCTAGCTTACCGTAGATGGTGGTACGGAGCCCGTTGACCGCTGTC
ATGTGTTTTTTTTCTCTTCAATTTTTTTTGCGAGGCTGCAACAACGCGCT
TCGATGAAGAGGCAACAAGCGCCGAGAACACAGCAGTACAGTTTGTTTGT
TGTTGTTGTTTCTCACGTTAGCTCTAGAAGAGTAAATGTGCCGATTAAGG
ACCACTTAACGGAGCCCCCGCTCTGAGAGGTCGTTCTCGGGTGTCTTGAT
TTGTGGCGACAGAGAGGTATCGAACGTTAGCTTATAACACGACCTAAACG
ATGAAACAACAAAAAACAAAAATAATGAATGTGGTGATGACATGGTGCCA
GCGTAGTATTCTTCATTTGTCAGGGGAAAATACCGGTTATACACAGATGC
CCCGATTGAGGACCACTTCGAATTCGTAGTGATTGCGCACGTTCTAATGA
TTTCCAGAACTTTTCCTTTGGCAAGGATCGTTATGGTAGTAATACAAAGC
ATTTCCGAAAAAATATTTTAAAATACATGCATGCCCGGGGACAAAAACAA
GAAATCCACGTGTTTTTTTGCCTGT
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protein sequence of EsuBft2475_3a-0001

>EsuBft2475_3 ID=EsuBft2475_3|Name=EsuBft2475_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=208bp
MLLLCCWQARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLC
MYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQDDYYNYYDDDYYNN
NDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPAAAM
AVTTAHVPAPQNTVSATYQPQNEHQHHERYHYQQHKAADPQQAPPSASER
PPPPGYYQ
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mRNA from alignment at Scaffold_100:175901..180868-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2475_3a-0001 ID=EsuBft2475_3a-0001|Name=EsuBft2475_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4968bp|location=Sequence derived from alignment at Scaffold_100:175901..180868- (Ectocarpus subulatus male Bft15b)
ATGTTGCTGCTTTGCTGTTGGCAGGCAAGAGCGTGTGCTATCTGCGCCAT
CATTGTCCATGTGGGTGCCCTGTTGGTGTTCGGCTGGCTGTGGGTGTGGC
AATGGATTGCCTCTGTCTTAGCCTTCATCATGTGCGGCGTTCTCCTGTGC
ATGTACGATCGGTGCGCGTACATCACGGGCGGCATCTGCTTCGCCGTGGC
CGCCGTGTTCGACATCTTAGTGTTGGTGGGATGGTGAGCCATGTGAATAG
TTAAGCTGATACCCAAGTATTCTGAACTTTAAAGTAGGGCAGTTCGCGTT
CCCCGTGCCATTATCTACCATCTTCAAGATCGACGGCCTGGCCCGTGCGT
GCGTTAAATGTGCTTCAGTGCCGACAGACATGGGTTATAATGATCACCCC
TGCAGTTAGACCACGGGGGTGAAGGGTGCAGGAACTACGAAGATCAGAGA
CAAGGTAAACAAGCAAGAGGATGACTTGAGTCAATGGTTCGAAACGACAC
CCCCTATCGCCGATGAACCCGTAGTCTTTGTTGGTGTTTTTCTTCCCCGT
GCATGGGGGGGGGGCGGGGGGGGGGTACTCATAGTCGTGCATGCCGTAGT
CGTTAGACCATTGACNTGACTTAATATATTTTCTGGTTCTTTCACTTCCA
GAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGGGTGCTTGACCATTTT
ATCACAACGTGGTGCGATCATCCCCCTAGCCCGGAGCGAGGGTTCTCCAC
CCCGCACAATCTGATCTACTCGACCACCATTATGGTTACCGCCAAAAAAA
AACAGAGGTGAAAAAAAAAGCCGGTAACCTGGTTGCCGGGTTCACGAAGT
GGCTTGTTTTCCAACGTCGTTGCCAAGCGACGAAAACCCAACTCCGATGG
TAAACACCGGGGGGGAGGCGACGTAGGGGGGGGTGTAAGGAAAGCGGAGT
TGCTTGCCGTGCCGGCTGGCCTCTTAGGTTCGAGAGATCGCACACCAAAG
AAGGGATGCTCCTCCAGACACGACAAAGAGTTCGCGCCAAAAGTCTCCAG
AATCGAAACCCACCATGTTGCTGAGGGTGCAATCGTAGTGACACGCTCTC
TCGCATGCTGCGTGCACGCTCCACCAACAAAACAGGCATCACAGCGCAGA
ACCCTGGTGTGATCGTAGCCTCCGGGTTTTCGCGTCCGGGCCCGAAGACA
TAGGCGGTTGATATTCAGGGCGGCTTGGCTGTGGGACGTTCTGCTATGAA
TCAACACGCCCGCAGTGGGCAGAGAACCATCGAGGGCTCGGACCCGACGA
GTTCGCCATCTTTTGTGGTCCTGTCTCGTCATGTGGCTTGAAACGGCCCC
CTGTGGTTTTGGTGTGGTATTCGTGAATTGGAGACTCATGCACTCAATAT
TGTATGTAGACTGTAGACAAGGGGCCGGCTCGGCTCTGCGGGCGACCGTC
CTGCTGCGTACCTGCTTTCCGTTTGTTCATCCGAAAACCCCAAATGGTGC
CTTTCCTGTTTTTTCTCAGGATTGCCATTTACAACAATCTTCAAGACGAC
TACTACAACTACTACGACGACGACTACTACAACAACAATGACGGTGAGTG
GGAGGACTGGAAGAACGTCATCCTCTGGTTCGCCCTACTCCCCTTCCTCG
GAGCCCTTTCCTTGGGCCTCGGTGCCGTGTTTTCCTTCACGTCGCTGTGC
TTCTGGAAGGACGCCGGCTCCCCCGCGGCGGCGATGGCGGTCACGACTGC
GCACGTGAGTGTTGACGTACTGTTGGTATTATTTTTTTTTTGTGAAAGCG
CAAAAACTACATACATTCGAAACGAGACTACCGTTCGATATAAAATACCA
CTCATTTCCGTTAGGTGAATCTGACTGCTTGCGTGGCACAACCATTTCCC
GCGAACGAAATGCATGTCAAGGTAAGAGCCGGCACCCCCGTGTGGAGGTA
GCAGCATTCGTTCTTTGAACCGCGATATTTCGAGGAGACGAGTACGGATA
CGGATGCCGGTGTTGATAACAGTACCATTACCACAACTTTTGTCTTGTAC
GCTCTGCCTACCCGGCAGGTTGGTATGGTTGACCTTTGTCGATAGTCGAG
CAAACACCACGACCCGTTTGACTGCGGTACGGGAAGACGCTGCCATCCGT
AAGGGGCGGAGGGGTGGCGACCCCGTCAGACAGACTTTCAAAGCCCGATC
ACTCAAAACTCAAGATTGTGCAAACACAAAAAAATGTTGCTTTTGGAAAC
ACCTCGTCGAGGGCGTTCCGTAGGCGTGACGGGCTCTTTCCTCACCACCT
TGGCTATAGGAGCAATCGAGCTCTGAAAGTCGGTCGAGGGGGGGGTGCCA
TTGCTCGGCTTTTTACGGTATTTGGCCGCGTTGGTCCCTTGCTTCGAGCG
CCATGTCGGTTCACACTGCAGTTAGACCAGCGGAATTTTGCCTTGATCAG
CAGCAACGGCCTTTCGACATCCTCCGCTCTCTTTGGTTTGGGATACGTTG
CCGTCGGCACCACCAGCCCCCCCGGTACGTATTGTCGATCGTGAGACTCA
GTGAGATCTTTGAACGTACATCGTTCTTTCTTTTTTCGTTTATCCTCCCA
AGTTATCAATGATATGCTGTTCACCTTTCTCGGTGCGGGAGGTATAGGTG
GGTAGTACTCTACATGTTTTCTCTGCTCGCTCGCACAGCACTTGAGGAAG
TCCCTCTTCGGTAATCTCCAGACTTCGATGAGATTCGTGATTCTTTGCCT
GCTGAAACTCCTTCCTCTGACTCTTTTCCGATCCAGGTCCCGGCACCTCA
GAACACCGTCAGCGCCACCTACCAGCCTCAGAACGAGCACCAGCACCACG
AGCGGTATCACTACCAACAGCACAAGGCCGCGGATCCCCAACAGGCACCG
CCTTCTGCGAGCGAAAGGCCGCCGCCCCCGGGTTACTACCAGTGAGGTTA
TGACCTTCGCCGGCACGCTCGGTGGCCGCTAGCTGCCACGTAAACGGGGG
CGAGCCTGGCCGGCGAGAACGTAGCAAGGATTGATTGTCCCGGCACATGA
TGTGGTGAGGGATAGATTCCGTCAGTCTCGTGGTTGCTTGTCCGTGTGGA
AGCGGAGCATGAAAGCACTCCCGGTGTATCGATGTGAGCCCCCCACATGT
TTGTAGGTATTGGATTGTGTAGCAATGGCATGGCCGGTATCATCCCCAGA
GGGGGGTGAATGCTCCAGGCCCAGAAGGCGTGCAAGGGTAGAGTCACGCA
TTTTGCTGAGTGCTGATCCTTGGATTATTTCGTTGTTTTGTTCTTTTTCG
CATCCCGTGACGAGCGGGAACGATGGGATCGTTTTGTTTTTTCTTGATCC
ATCCCATTCGCCCATTAAGTCACCAGGGACGTTTCACTGCTGTATTGGTG
GAAGGTCTGGCTTGGTTTGGGCGGTTTTGTTGGAGGTCGGTTGTGTATGT
GCTCAGTAGTTTTGTATCGATTTTTCTTGGTCCTGGTATGTCATTCTTGT
TTCTAAGAAAAAGGGTGCACCCTTTGTACAGTGCCAGCCCGCTCGCAAGA
AACAATCTGGCAAGAGCTTGAGCCTAGGTTTTTACTAATTAGAAGAGGGC
CGTAACAAACTACACCCATTTGATGAAGTACCATATGGAGAAATAACAAA
TCCAATAGACCTTCCATCGGTACGAAGCGTAAATATTTGGGGTAGGACGT
GGTACGAGGGAACGACCTTCGACCCCCGTGTCGCAGGNGACCTTCCATCG
GTACGAAGCGTAAATATTTGGGGTAGGACGTGGTACGAAGGAACGACCTT
CGACCCCCGTGTCGCAGCTCGACAGCGATGACGACTTCGATTAACGGTGA
GGAAATTGTTTGATCAGTCGTTGAAGACTGCCTTCTGGAAGCGTTTTTGA
GTTCTTAATTGCGGGAGATCAGCAGGTCGTGCGGCTGGCACGCAAAACAA
CCAAATTTAGAAGCCACGCAAACTTGCCGCGTTTTGCTCGTGTACGATCA
AGCATCATCACAAGCGTGGGCTTGCCTCTTTGTCTAGGGTGTAGACGAGT
CGAATCCAGCCTTAGGAGCATGGGCCAGACTACATGGAGCCGAAAGACGA
TGACTGCGAGTGCTCGCGCATCCTCAACGTTTATAATATCGACTAAGAGG
TGAGAGTTGGAGTGCACATGTACAACAGGTCGGGACCAATTTGGCCATTG
AGTCTCGAAGGGGAGTCCCTTTTTTTCCGCCCTCCGGAACGAGAACGTTG
TGCGTGCACACGATCGTGTAGTTCTGTTGTAGAGTACATGCATACTGGTA
CTGTAGACATATGCGCAATAGTGGGCGCAATGCATATTTTTTTCAAAGTC
GGATAAAGGGCTGCCGGCGAATGTCAAATGAAGGTGGCGCGCAGGGTAGC
TAGCTTACCGTAGATGGTGGTACGGAGCCCGTTGACCGCTGTCATGTGTT
TTTTTTCTCTTCAATTTTTTTTGCGAGGCTGCAACAACGCGCTTCGATGA
AGAGGCAACAAGCGCCGAGAACACAGCAGTACAGTTTGTTTGTTGTTGTT
GTTTCTCACGTTAGCTCTAGAAGAGTAAATGTGCCGATTAAGGACCACTT
AACGGAGCCCCCGCTCTGAGAGGTCGTTCTCGGGTGTCTTGATTTGTGGC
GACAGAGAGGTATCGAACGTTAGCTTATAACACGACCTAAACGATGAAAC
AACAAAAAACAAAAATAATGAATGTGGTGATGACATGGTGCCAGCGTAGT
ATTCTTCATTTGTCAGGGGAAAATACCGGTTATACACAGATGCCCCGATT
GAGGACCACTTCGAATTCGTAGTGATTGCGCACGTTCTAATGATTTCCAG
AACTTTTCCTTTGGCAAGGATCGTTATGGTAGTAATACAAAGCATTTCCG
AAAAAATATTTTAAAATACATGCATGCCCGGGGACAAAAACAAGAAATCC
ACGTGTTTTTTTGCCTGT
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Coding sequence (CDS) from alignment at Scaffold_100:175901..180868-

>EsuBft2475_3a-0001 ID=EsuBft2475_3a-0001|Name=EsuBft2475_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=627bp|location=Sequence derived from alignment at Scaffold_100:175901..180868- (Ectocarpus subulatus male Bft15b)
ATGTTGCTGCTTTGCTGTTGGCAGGCAAGAGCGTGTGCTATCTGCGCCAT
CATTGTCCATGTGGGTGCCCTGTTGGTGTTCGGCTGGCTGTGGGTGTGGC
AATGGATTGCCTCTGTCTTAGCCTTCATCATGTGCGGCGTTCTCCTGTGC
ATGTACGATCGGTGCGCGTACATCACGGGCGGCATCTGCTTCGCCGTGGC
CGCCGTGTTCGACATCTTAGTGTTGGTGGGATGGATTGCCATTTACAACA
ATCTTCAAGACGACTACTACAACTACTACGACGACGACTACTACAACAAC
AATGACGGTGAGTGGGAGGACTGGAAGAACGTCATCCTCTGGTTCGCCCT
ACTCCCCTTCCTCGGAGCCCTTTCCTTGGGCCTCGGTGCCGTGTTTTCCT
TCACGTCGCTGTGCTTCTGGAAGGACGCCGGCTCCCCCGCGGCGGCGATG
GCGGTCACGACTGCGCACGTCCCGGCACCTCAGAACACCGTCAGCGCCAC
CTACCAGCCTCAGAACGAGCACCAGCACCACGAGCGGTATCACTACCAAC
AGCACAAGGCCGCGGATCCCCAACAGGCACCGCCTTCTGCGAGCGAAAGG
CCGCCGCCCCCGGGTTACTACCAGTGA
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