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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FYN9 |
| ProteomeId | EsuBft2350_4 |
| Protein domains | PF12352 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR21230 |
| Protein domains | Coil |
| Protein domains | G3DSA |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | membrin-12 os:arabidopsis thaliana gn:memb12 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1292 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.85e-110 |
| EggNOG OGs | KOG3251@1|root,KOG3251@2759|Eukaryota |
| Ec32 ortholog description | Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) |
| Ec32 ortholog | Ec-17_000170.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | GOSR2 |
| KEGG rclass | RC00004,RC00061,RC02742,RC02857 |
| KEGG ko | ko:K00627,ko:K03935,ko:K08496,ko:K19200 |
| KEGG TC | 3.D.1.6 |
| KEGG Reaction | R00209,R02569,R11945 |
| KEGG Pathway | ko00010,ko00020,ko00190,ko00311,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04130,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00010,map00020,map00190,map00311,map00620,map01100,map01110,map01120,map01130,map01200,map04130,map04714,map04723,map04932,map05010,map05012,map05016 |
| KEGG Module | M00143,M00307 |
| GOs | GO:0000139,GO:0000149,GO:0002682,GO:0002791,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006950,GO:0006986,GO:0006996,GO:0007034,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0022607,GO:0023052,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030968,GO:0031090,GO:0031201,GO:0031224,GO:0031347,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033116,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042147,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0048583,GO:0050708,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080134,GO:0090087,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:1903530 |
| EC | 1.6.5.3,1.6.99.3,2.3.1.12 |
| Description | vesicle fusion with Golgi apparatus |
| COG category | U |
| BRITE | br01601,ko00000,ko00001,ko00002,ko01000,ko01002,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0005801 |
| GO | 0016192 |
| GO | 0009653 |
| GO | 0050708 |
| GO | 0004571 |
| GO | 0045088 |
| GO | 0060541 |
| GO | 0044446 |
| GO | 0044425 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2350_4a-0001 ID=EsuBft2350_4a-0001|Name=EsuBft2350_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1292bp|location=Sequence derived from alignment at Scaffold_100:96678..102031+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTACTGCTGCTGTTGTCAACCAACTACTGCTTGCTGTAGAGCGTCAACTC TCCTCTCACCGTCACAACAGTCACACTCGAACGGAAGGAAGTCCTGCTGG TTGCAGTTCTCTGCTCCGCAGTGCTTCCCGACGCCCGTAAACTCCGGCAT ACTGGTCCGTGTGTAGTGTCTTCGTGGGTTTGGGATTGGACTACTGTCGA AGGACACTGTCGAAGCATGCGGAGGAATTGGGCCGAGGCCCCGCGAAGCG CAAAGAGGTTCAGCACAGTACGTCGAGAGAGGACACGCGAGCCCCGACGA TGCCGGCATGAACCTGGAGGAGTTTGGCCGGCAGCTGGACGTGTTGGAGA GCTTGGTGGGGCAGGAGCGGCCAACACAACGAGAAGACTGGCGCAGGAAG CTCCGGGAATTGCGAAACGAGCACGTTTTCTTGCGAGATCAGCTGGGAAG GTTCGACCAAGGGCGGCGAAAGGTCGGCCAGGAGGCCAAGGAACGGGAGG AGCTGTTGGCGCGAAGACATGCGGCTCTGCCATCATCGGTGATGGACGCC TACGCTGAGGAGGGGAGCTCCTTGCTGAGGTCGCGGAGAATGGTCGGTGA TTACCTGCAAACAGGCCAAGCTTCGCTCACTAGTCTCGTGGAGCAGAGGT CGCGCTTAAAGGCGAGGGAGAACGCACATCGAAAGGTGCTAGATATGGCG AACATCCTTGGCTTGAGCAACTCCATCTTGAGAGTGTCAGATAGAAGACA GGCCGTTGACAGGCTCCTGGTGCTTGGGGGCATCATCGTAACGTCTGCGT TTTTGTGGTGGATGTGGGGCAGGCGGGTTGCATCGTAGGTTCCCTGTTCC CCTGTGACCCCAAATGTGATGCGTGGGTCTTGGCTCTTGCTTGGTGGTGC GGTGCCTTAGGTGGCACCGGTCGCTCATAAGCGCAGGAGATACATCAACA GAGCACCGCCGTTGAAGTGTCAGCACTACAGTTTCTAGAGTAGTCTAAAA GTGTTTTGTTTTCGTTGTTGGTGCCTTGTACGCGGAGATTGACGTCTGCT CAATAGTTGTAGGGCGCAGCGCCTTTGCGGTGCGCAACTGATTTTGCGTG CCCGGGATGTTAGCTCGGGCGGTACCAGACATGAGGGACAACTAAAAGGA ACAAAGGTCGTTTTTTTATATACCGTGGTGTTCTAGAAAGAGGTACAGTT GGGTTAGAACCGATAACATCGGCGGTTCAAACAGATACCGGCATCTTTCC GTAAAACTGGAGATGCGCGTTGATAATATTTGGACGCCCATG back to topprotein sequence of EsuBft2350_4a-0001 >EsuBft2350_4 ID=EsuBft2350_4|Name=EsuBft2350_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=176bp
MNLEEFGRQLDVLESLVGQERPTQREDWRRKLRELRNEHVFLRDQLGRFD QGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYL QTGQASLTSLVEQRSRLKARENAHRKVLDMANILGLSNSILRVSDRRQAV DRLLVLGGIIVTSAFLWWMWGRRVAS back to topmRNA from alignment at Scaffold_100:96678..102031+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2350_4a-0001 ID=EsuBft2350_4a-0001|Name=EsuBft2350_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5354bp|location=Sequence derived from alignment at Scaffold_100:96678..102031+ (Ectocarpus subulatus male Bft15b) TTACTGCTGCTGTTGTCAACCAACTACTGCTTGCTGTAGAGCGTCAACTC
TCCTCTCACCGTCACAACAGTCACACTCGAACGGAAGGAAGTCCTGCTGG
TTGCAGTTCTCTGCTCCGCAGTGCTTCCCGACGCCCGTAAACTCCGGCAT
ACTGGTCCGTGTGTAGTGTCTTCGTGGGTTTGGGATTGGACTACTGTCGA
AGGACACTGTCGAAGCATGCGGAGGAATTGGGCCGAGGCCCCGCGAAGCG
CAAAGAGGTTCAGCACAGGTACCCTCGTCAGTTGCTATTGGTACAACTTG
CACCCGAGCGAGAGGTCAGGTTGACCTCCAACCTTCTCATCTTGGGGTAT
TGGCCTCTCTCTTGTGTACTTGCTCTCTCAAGACCTCTCGTTTTTTCTTG
CAGGGATCATCGGGATAGATCAGTTGTGGATGAGACGACATGACGTCAAT
CGTGGAGCTGTTTCCGAAAGCGAGAAGGTTGTCGTTTGATCTGCGGACGT
TGCTGCAGTACGTCGAGAGAGGACACGCGAGCCCCGACGATGCCGGCATG
AACCTGGAGGAGTTTGGCCGGCAGCTGGACGTGTTGGAGAGCTTGGTGGG
GCAGGAGCGGCCAACACAACGAGAAGACTGGCGCAGGTGTGGCATTTACT
TGCAGTGTACGTAGATATCTACACGTCTGCGGGCAAATACACAGCAGTTG
TTGTTGTTATTGTTGTTGTCTTCACGTTAAAAAACGTTCCGATCTCTCTC
TACCCGTACCTGCGCATGTNCGTAGATATCTACACGTCTGCGGGCAAATA
CACAGCAGTTGTTGTTGTTATTGTTGTTGTCTTCACGTTAAAAAACGTTC
CGATCTCTCTCTACCCGTACCTGCGCATGTCCGTACTGATACAACACTGG
ACGCGGTCGATTCCCGTGGTCGCAGGCTAACTTACCCTAAAAAGTTACGC
TCAAATAAAATGGCCCCGACGGTCCCGAGGGGTCCGCAAGTCAGTAGAAA
TCAACGACAGATATTCTGAAGTCCTCCACTCCCTCTGCGCGCTATGCGAG
GTAACAACTGAGACTAGGAGTCACCATCAGGGGCCGGAGAGAATGAGGTA
CACCCCCTTGGTTCAATCTTGGTACTTCACAACGCAAGCAGAAACAAGGC
CATCTGGCACAGAAAAAGAGAGAAAAAGAGAAAAAGAGCAGAAAACAGAC
GGAAACAGTAAGGAGAGAGAAAATGAAATAAAAAGAGCGAGGACAAAAAG
GGATCAGGCCGAAAATATCAAGAAATAAGAGACAGAGAAAGGCACACGGT
GGAGAGACCACTAACGACAAGCACACACGCAAACATGGCCACCAACCAGC
GATACATTGTAATGGTACGTCATCACTAGTGGGGGGGTGCAAAGCAGTAG
ATGTTCCGACAAAGACGAGGCACCTCTACCGCTGTAGTCAGCAGCAGTGC
AGTCCGTAGGTGTTGAGGGAGGTACGGGTCAGTGTAGAGAGCACTCTTGT
GCAATGCAGGTTAACCGAGATTGCAGATATGGAACTTTTGGATCTGCTCG
AAAACACCACACGATGCACAGCAGTATGCATACAAGATCGTATGCAGATG
TTCGGCTGGCACTCTAGTCTACTTCCTTTCAATCTATCTTCACTCCATAA
CGGATGTATTGGTCTTATCCCAGCATCGTTGGGTCTCGTTTGAGCCACTG
TCTAGACGTCTAGAACACAGCAGTGTACGTGTCGTGGTGAAAGAGTTGTG
AAGAAGAAACATTTTGAGAGTGGATGCACTGGCACAGCCGGGGCCGTGTA
TGGTGTGCGTCTCTCAAGGCGCGCTGGTATGGATATCATGGTTGGGTCTG
GTCCAAGGTCCAAGAGTCAGCGTCACCCCTGTTCAATTGGCTTGCTTGCA
AATGTAGAGCTTGTGATCTGATATGGGTGCGGAGTTTGGAGGTGCTTGAC
GACAGCAGTAGTAGCAAGGTGACCTGCAATATTTTTTATGTTTACCGGTC
GTGCTGCTATGATCACCCCCTCTAGTGCTGATCGTTAATGCCGCTCAATC
GCCGCCGCCACCCGTCCATCCTAGGAAGCTCCGGGAATTGCGAAACGAGC
ACGTTTTCTTGCGAGATCAGCTGGGAAGGTTCGACCAAGGGCGGCGAAAG
GTCGGCCAGGAGGCCAAGGAACGGGAGGAGCTGTTGGCGCGAAGACATGC
GGTGAGACTCGACTTCGGCTCTTCAGCGTTGTCCCTCAAGCAAAGCATAC
GTATTCGTTGGAAAAGTGATCGGCCGCATCGGAAGCCAGTGATGCTGGTA
GATTTCTAGAAAATATGCCAACTAGTGCCGGTCGCGAAGACAAAATGGAC
TTTCACCTGTGTTTTTATCTGAGCTCCTAGCCTGTTTGTCGGATCATGGG
CAGTTTAGCTGCAGTAGCTCGTGCCCCCGGAACTGATGCCTCTGGCCACC
TCTTCGCGGTCCGTCCCAGGAGTGCGACGCCATATAAATGAAGAGTGGCT
ACGTGCGCGGGACCTTGTCCGTCGTGATATAGCTAGTCGTCAACAGCTTC
TGCGTTGCCTCTTGTCGCGTATCACGAGCAGGATGGTTGTATCCTCTCGT
CTTGAACACGAGCACCATGGTTTCAGTTTCTTGGCTTCCCTCATATCTTC
ACCGCCCATAGGACCGGGGCAGATTGTTATGGCTAGGGCTGTTGAAGAGT
TTCTGCAGTCCGATTAGCCCTCCATGTACGGTATCGTATCACCGCCTCGT
GCCGGGCAAGTTGTGCAACGTCCTTTGCAAACCAAGGATACTGGAGGGTT
AGGGTCGCGCGAACGCAATTGTGTGAGAAGTCGCACCCCCAGTTGACCGA
CTATCATACGTAGCTGCCATTCCCCCAACAAGAAGCCAAGAGAGTGATGA
TGTGAGGATGGTGCCAATGCAGAAACTGTGGTTGATCTCCTCTTGGTGGT
GAGCATTCGGGCCTCGAGAGTAAGTCGAAGGGATTGCGACCACTGCTGTA
ACACGTAACACTTGCGGTCTCCTATGCATATTTCTGTCTGTATTTGGAAC
CCGTATTTTTTCTGCTATTATTGACAAATTTGAGATGATTTTCCGCGTCT
TGTGCATGCCCTCATCGCAGAACCCCTCTCCCAACGCCAACATGTTCGAG
GTTTTCAAGTTTTCTGCGTTTCTTCCCACGCATCGTGTTTTAGACGTCAG
GGAGGTCTCTCCTCGCGGTGTTCTATGCTAGGGCCAACGGAACTCGCACA
CCTTGGCGCTTTGTCCGAGTCACGACACCTTGTCAAGATAATTTCATTTT
GAGGAACCGCATTTCTATCTTGACGGTGTTGAGTTCTGTACACTCACGAA
TAAAAAGGGCATTTTTACCAATATCCATGCACGCATCACGGCAGAGGTCG
GAAGTTATGCTTGCCCTTGACTACCCTAAAGTCAAGATATGTCCTTCTTT
GTTCGTATGCATTCTGTGGGTCATGCGACCATTCCACTTATTTTGGTCCC
TCGCGGTAGTGGTGGTGACGTTGTTATATACAGGCCAACTACCCAAAGGC
TGGGTATGAAACTATGATAGTCGACCGTTTGCCTTTCTCTACTCTCTCGT
CTCTTTCGATCAATGATCAATGGCCAGGCTCTGCCATCATCGGTGATGGA
CGCCTACGCTGAGGAGGGGAGCTCCTTGCTGAGGTCGCGGAGAATGGTCG
GTGATTACCTGCAAACAGGCCAAGCTTCGCTCACTAGTCTCGTGGAGCAG
AGGTCGCGCTTAAAGGCGAGTAGGCTGCGTATTCGCTGGCTGTTGTTGGC
GGCCTCGATGGTGTCATCTCTCTCTGATCTCCCACCGCCTCATGTGTGTG
TCGGGGGACCTGGGCAAAGATTCGGGTTCGGGTTGAGGTTAGGGTCAGGG
TTACCTGAAGAAGTTGTCGGCACTCTGCCGTCGATGGGATAGTTTTCCGT
GGGCTTGGCTTAGTTTGGGAAAGACGCCAGTGTGCTGGGACATACATGCC
TGTGGTTGCAGCGTCTTCTGAGTTGTCGCTCGCCCCACTGGGTTGCCCCC
CCCCCCCTCCCTAAAAGGTTACAATCCCAGAAGTTATCCCAACGACGCTG
ACGTCCCCTGATAGCAGTGATTCTTTCAGGTCCTCGTCCTGCCGTGCATT
TTGAGTTACTTAAAAGGGGAGGTGTTCTCCCGAAAATGTGAGGTCCACTC
CCCCGGGAGGTACAAGTATGTCTACACCGCTTGTCCCAGCGACCATTAGA
TGCTGTTGTTGTCATTCTGTTGGTTGCTGTGCCGTCGTGCTGTGTAATGC
TCTCCTTTTCCCCCTGTCGCCTTGGGTAGTCCATACTACGACCGAAAGAT
GTGTCGTTTTTGTAATGTTTTTTCAAACTTCCCTTCGGCGATTGCTCTCC
CCGGGATTCTTGGTCCCTTTACCTGCGGTGGCTCAGAGGTTGGTAGGGTA
GTCGTCACGATGGCACAGCACCAAGATGCCAAGATTCTGGCGTGACCGCA
ACAACTTCGACGAACACACTCGCCCTGCTGATGCCTCTTGTCCCGGGTGT
TGATGGGGCCGACGTTATTCGCGCTCTTCTTTGTACCTCGAAACTTCAAA
ATGGCTGCCCAGTCCCAATGCAATGTGAAAGCCGGATAGTACACCATTGT
CTTGTTTATGCCAACGGCGACCCTCCCCACCCACCCACCCCCCGATGCCC
TGCTTTCGTACAATCACTTTTTTGTCCCTCAGAACGCACATCGAAAGGTG
CTAGATATGGCGAACATCCTTGGCTTGAGCAACTCCATCTTGAGAGTGTC
AGATAGAAGACAGGCCGTTGACAGGCTCCTGGTGCTTGGGGGCATCATCG
TAACGTCTGCGTTTTTGTGGTGGATGTGGGGCAGGCGGGTTGCATCGTAG
GTTCCCTGTTCCCCTGTGACCCCAAATGTGATGCGTGGGTCTTGGCTCTT
GCTTGGTGGTGCGGTGCCTTAGGTGGCACCGGTCGCTCATAAGCGCAGGA
GATACATCAACAGAGCACCGCCGTTGAAGTGTCAGCACTACAGTTTCTAG
AGTAGTCTAAAAGTGTTTTGTTTTCGTTGTTGGTGCCTTGTACGCGGAGA
TTGACGTCTGCTCAATAGTTGTAGGGCGCAGCGCCTTTGCGGTGCGCAAC
TGATTTTGCGTGCCCGGGATGTTAGCTCGGGCGGTACCAGACATGAGGGA
CAACTAAAAGGAACAAAGGTCGTTTTTTTATATACCGTGGTGTTCTAGAA
AGAGGTACAGTTGGGTTAGAACCGATAACATCGGCGGTTCAAACAGATAC
CGGCATCTTTCCGTAAAACTGGAGATGCGCGTTGATAATATTTGGACGCC
CATG back to topCoding sequence (CDS) from alignment at Scaffold_100:96678..102031+ >EsuBft2350_4a-0001 ID=EsuBft2350_4a-0001|Name=EsuBft2350_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_100:96678..102031+ (Ectocarpus subulatus male Bft15b) ATGAACCTGGAGGAGTTTGGCCGGCAGCTGGACGTGTTGGAGAGCTTGGT GGGGCAGGAGCGGCCAACACAACGAGAAGACTGGCGCAGGAAGCTCCGGG AATTGCGAAACGAGCACGTTTTCTTGCGAGATCAGCTGGGAAGGTTCGAC CAAGGGCGGCGAAAGGTCGGCCAGGAGGCCAAGGAACGGGAGGAGCTGTT GGCGCGAAGACATGCGGCTCTGCCATCATCGGTGATGGACGCCTACGCTG AGGAGGGGAGCTCCTTGCTGAGGTCGCGGAGAATGGTCGGTGATTACCTG CAAACAGGCCAAGCTTCGCTCACTAGTCTCGTGGAGCAGAGGTCGCGCTT AAAGGCGAGGGAGAACGCACATCGAAAGGTGCTAGATATGGCGAACATCC TTGGCTTGAGCAACTCCATCTTGAGAGTGTCAGATAGAAGACAGGCCGTT GACAGGCTCCTGGTGCTTGGGGGCATCATCGTAACGTCTGCGTTTTTGTG GTGGATGTGGGGCAGGCGGGTTGCATCGTAG back to top
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