EsuBft2347_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2347_6a-0001
Unique NameEsuBft2347_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:184786..185098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog157072.XP_008863623.1
ProteomeIdEsuBft2347_6
Protein domainsPTHR10484
Protein domainsIPR019809
Protein domainsIPR007125
Protein domainsIPR001951
Protein domainsIPR009072
Ownerapollo_admin@sb-roscoff.fr
Notehistone h4 os:solanum lycopersicum pe:3 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length313
Hectar predicted targeting categoryother localisation
Evalue1.61e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
GO0000786
GO0009414
GO0055085
GO0006334
GO0005829
GO0046982
GO0005774
GO0016168
GO0005730
GO0009506
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_6aEsuBft2347_6aEctocarpus subulatus male Bft15bgeneScaffold_347 184786..185098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_6a-0001-exonEsuBft2347_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 184786..185098 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_6a-0001-exonagat-three_prime_utr-9435Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 184786..184786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_6a-0001-cdsEsuBft2347_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 184787..185098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_6a-0001EsuBft2347_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 184787..185098 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAA
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protein sequence of EsuBft2347_6a-0001

>EsuBft2347_6 ID=EsuBft2347_6|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=103bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG
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mRNA from alignment at Scaffold_347:184786..185098-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAA
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Coding sequence (CDS) from alignment at Scaffold_347:184786..185098-

>EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=312bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAA
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