EsuBft2263_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2263_5a-0001
Unique NameEsuBft2263_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:18496..18940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2263_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length44
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_5aEsuBft2263_5aEctocarpus subulatus male Bft15bgeneScaffold_548 18496..18940 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_5a-0001-exonEsuBft2263_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 18496..18940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_5a-0001-cdsEsuBft2263_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 18496..18798 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_5a-0001-exonagat-three_prime_utr-9031Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 18799..18940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2263_5a-0001EsuBft2263_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 18496..18798 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2263_5a-0001 ID=EsuBft2263_5a-0001|Name=EsuBft2263_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=445bp|location=Sequence derived from alignment at Scaffold_548:18496..18940+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTCCGTGCGCCACGGGTCGATGTCGCCCGCATGCTCCGGTGCCG
CTGCTCCATCCGGCGCCGCTGTAGTCAGCCCGAGCAAAACGCCACTCGAC
CTGCTCCGTTCGTACACGCTCTCGTTGCTGTCCTTCCCAGTCGGTTCCGC
ACTTTCTCCCTCATTGCACTGAAGGTCCTTGGTCTGAAAAAAATAAAATT
TCTCGCGCCGAATGGTCAACCAGCCCAGTTCAGCTCGTCGCTACCTGCTC
CCTCCTCCTTTGATGGCGAAGCCAGGTTACTGAGGCAATACAGCTCCCTC
TAGCAAACCTAGGGCCGTGTAGTGTCCGTCCACCTTTCTGATGGTGTCTG
CCTCCGCGCACAAAAATGAGACGGGCATCACTGCCTACGCCGACGGCCAG
AAAGGCCCGCGCATGTACATTTTCCCGCCTGACCCCATCAGTGCC
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protein sequence of EsuBft2263_5a-0001

>EsuBft2263_5 ID=EsuBft2263_5|Name=EsuBft2263_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MFVRAPRVDVARMLRCRCSIRRRCSQPEQNATRPAPFVHALVAVLPSRFR
TFSLIALKVLGLKKIKFLAPNGQPAQFSSSLPAPSSFDGEARLLRQYSSL
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mRNA from alignment at Scaffold_548:18496..18940+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2263_5a-0001 ID=EsuBft2263_5a-0001|Name=EsuBft2263_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=445bp|location=Sequence derived from alignment at Scaffold_548:18496..18940+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTCCGTGCGCCACGGGTCGATGTCGCCCGCATGCTCCGGTGCCG
CTGCTCCATCCGGCGCCGCTGTAGTCAGCCCGAGCAAAACGCCACTCGAC
CTGCTCCGTTCGTACACGCTCTCGTTGCTGTCCTTCCCAGTCGGTTCCGC
ACTTTCTCCCTCATTGCACTGAAGGTCCTTGGTCTGAAAAAAATAAAATT
TCTCGCGCCGAATGGTCAACCAGCCCAGTTCAGCTCGTCGCTACCTGCTC
CCTCCTCCTTTGATGGCGAAGCCAGGTTACTGAGGCAATACAGCTCCCTC
TAGCAAACCTAGGGCCGTGTAGTGTCCGTCCACCTTTCTGATGGTGTCTG
CCTCCGCGCACAAAAATGAGACGGGCATCACTGCCTACGCCGACGGCCAG
AAAGGCCCGCGCATGTACATTTTCCCGCCTGACCCCATCAGTGCC
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Coding sequence (CDS) from alignment at Scaffold_548:18496..18940+

>EsuBft2263_5a-0001 ID=EsuBft2263_5a-0001|Name=EsuBft2263_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_548:18496..18940+ (Ectocarpus subulatus male Bft15b)
ATGTTTGTCCGTGCGCCACGGGTCGATGTCGCCCGCATGCTCCGGTGCCG
CTGCTCCATCCGGCGCCGCTGTAGTCAGCCCGAGCAAAACGCCACTCGAC
CTGCTCCGTTCGTACACGCTCTCGTTGCTGTCCTTCCCAGTCGGTTCCGC
ACTTTCTCCCTCATTGCACTGAAGGTCCTTGGTCTGAAAAAAATAAAATT
TCTCGCGCCGAATGGTCAACCAGCCCAGTTCAGCTCGTCGCTACCTGCTC
CCTCCTCCTTTGATGGCGAAGCCAGGTTACTGAGGCAATACAGCTCCCTC
TAG
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