EsuBft2133_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2133_2a-0001
Unique Name	EsuBft2133_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:371341..372258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2133_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	91
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_2a	EsuBft2133_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 371341..372258 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_2a-0001-exon	EsuBft2133_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 371341..372258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_2a-0001-cds	EsuBft2133_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 371341..371619 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_2a-0001-exon	agat-three_prime_utr-8360	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 371620..372258 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_2a-0001	EsuBft2133_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 371341..371619 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:371341..372258+
coding sequence from alignment at Scaffold_68:371341..372258+

spliced messenger RNA

>EsuBft2133_2a-0001 ID=EsuBft2133_2a-0001|Name=EsuBft2133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_68:371341..372258+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGGCTATTCGACCAACAGACCACCAGCAGACCACGCTCACGAAC
ACACGTCACCAACACCCCGCACTCGAGTTCCGACGCTTCCGACGGCGGGC
GGAGGCGGACACTAACGCGGCGGAACTCTCGTCTGAAGTGGATCTCTCTC
CTGCAAGACTCCTCCTGCAACCCACCGCCGACGGCGGAACTCTCTCGGTT
CTCGTTTCATATCGGAGAGGGAGGAGAGAGAGGGCCAGGCGGACGGGGGT
GGATGAATACCTCTCAATACCTCACGTGATCACTTGAGCTGCACACAAAT
ACATGACGCAGCTCAGATATGTCCATGGAAGCATCAAGCACAGAAGCATC
AGGGTGTCGCTTTCGTCTGGAATAGACTACATGTAGACACATCAAGACCG
GAGATGTATGGTACGGTGTTGTGTACGCAGAGGCTCGTTCATACACAGCA
ATGCAGCAGCAGCAAGCAGTGGATGCCGTGGTTATGTCTCGATCAAGAGG
AAGACCGGATATATATGACACACTGCTGTTGTGTAGGAAGAGGATCGTAC
AGTAATGCAGCAGCAGCAAGCAGTGGATGCCGTGGGACCTCAGATTAAAC
AGCGACAATACTTCCTTGACTTCGACCTCTCGTGAGTACGTGGGAGAGAC
AAGGAACTGCGGGCTTGCCACAGGAGATGGGGAAAGATAGAGAGAGTGGT
GGTACACGCAGCATGAACGCTGTCCTAAGATGGCTGGTGGTGAAGTAGCA
CGCGCCTTGCGCGAGGACCGCGGGCGGTGTTCTCTACTTCATCGCTCATA
TTCTGCCGATGCCAGTCGATCGTTCAGGCACGAGTGCCGAGATTAACCAT
GAGAGACTTGGTGGGTTGAGGAGCGACATCTACTTGCAGGAGCGAGGTCT
ACTTCAAACAAGAGTTCC

protein sequence of EsuBft2133_2a-0001

>EsuBft2133_2 ID=EsuBft2133_2|Name=EsuBft2133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MAGLFDQQTTSRPRSRTHVTNTPHSSSDASDGGRRRTLTRRNSRLKWISL
LQDSSCNPPPTAELSRFSFHIGEGGERGPGGRGWMNTSQYLT

mRNA from alignment at Scaffold_68:371341..372258+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2133_2a-0001 ID=EsuBft2133_2a-0001|Name=EsuBft2133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_68:371341..372258+ (Ectocarpus subulatus male Bft15b)
ATGGCTGGGCTATTCGACCAACAGACCACCAGCAGACCACGCTCACGAAC
ACACGTCACCAACACCCCGCACTCGAGTTCCGACGCTTCCGACGGCGGGC
GGAGGCGGACACTAACGCGGCGGAACTCTCGTCTGAAGTGGATCTCTCTC
CTGCAAGACTCCTCCTGCAACCCACCGCCGACGGCGGAACTCTCTCGGTT
CTCGTTTCATATCGGAGAGGGAGGAGAGAGAGGGCCAGGCGGACGGGGGT
GGATGAATACCTCTCAATACCTCACGTGATCACTTGAGCTGCACACAAAT
ACATGACGCAGCTCAGATATGTCCATGGAAGCATCAAGCACAGAAGCATC
AGGGTGTCGCTTTCGTCTGGAATAGACTACATGTAGACACATCAAGACCG
GAGATGTATGGTACGGTGTTGTGTACGCAGAGGCTCGTTCATACACAGCA
ATGCAGCAGCAGCAAGCAGTGGATGCCGTGGTTATGTCTCGATCAAGAGG
AAGACCGGATATATATGACACACTGCTGTTGTGTAGGAAGAGGATCGTAC
AGTAATGCAGCAGCAGCAAGCAGTGGATGCCGTGGGACCTCAGATTAAAC
AGCGACAATACTTCCTTGACTTCGACCTCTCGTGAGTACGTGGGAGAGAC
AAGGAACTGCGGGCTTGCCACAGGAGATGGGGAAAGATAGAGAGAGTGGT
GGTACACGCAGCATGAACGCTGTCCTAAGATGGCTGGTGGTGAAGTAGCA
CGCGCCTTGCGCGAGGACCGCGGGCGGTGTTCTCTACTTCATCGCTCATA
TTCTGCCGATGCCAGTCGATCGTTCAGGCACGAGTGCCGAGATTAACCAT
GAGAGACTTGGTGGGTTGAGGAGCGACATCTACTTGCAGGAGCGAGGTCT
ACTTCAAACAAGAGTTCC

Coding sequence (CDS) from alignment at Scaffold_68:371341..372258+

>EsuBft2133_2a-0001 ID=EsuBft2133_2a-0001|Name=EsuBft2133_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=279bp|location=Sequence derived from alignment at Scaffold_68:371341..372258+ (Ectocarpus subulatus male Bft15b)
ATGGCTGGGCTATTCGACCAACAGACCACCAGCAGACCACGCTCACGAAC
ACACGTCACCAACACCCCGCACTCGAGTTCCGACGCTTCCGACGGCGGGC
GGAGGCGGACACTAACGCGGCGGAACTCTCGTCTGAAGTGGATCTCTCTC
CTGCAAGACTCCTCCTGCAACCCACCGCCGACGGCGGAACTCTCTCGGTT
CTCGTTTCATATCGGAGAGGGAGGAGAGAGAGGGCCAGGCGGACGGGGGT
GGATGAATACCTCTCAATACCTCACGTGA