EsuBft2100_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2100_7a-0001
Unique NameEsuBft2100_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:224725..226044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2100_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_7aEsuBft2100_7aEctocarpus subulatus male Bft15bgeneScaffold_100 224725..226044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_7a-0001-exonEsuBft2100_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 224725..225042 +
EsuBft2100_7a-0001-exonagat-exon-9823Ectocarpus subulatus male Bft15bexonScaffold_100 225743..226044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_7a-0001-cdsEsuBft2100_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 224725..225042 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_7a-0001-exonagat-three_prime_utr-8202Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 226019..226044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_7a-0001EsuBft2100_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 224725..226018 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2100_7a-0001 ID=EsuBft2100_7a-0001|Name=EsuBft2100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=620bp|location=Sequence derived from alignment at Scaffold_100:224725..226044+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCCGGCCTGACGGGGCTGCGGAGGAGGGCGGGGAGGATACGCT
TTTCGACGACCCCGTGGAGGTGGTCGGCGAAGAGCTCGAAGGTTTACTGC
GGCTCTCCCCCCCAAGCACGTCCAGCACGCCCGTGTTGGCCATCATCACG
CAGCACGCGATCGAGTCGCCAGAGACGATCCGCGATTTTATTGAAGAGAC
AGCAGCCAGGCTGGCGAAGGAGTCGGGATGCCAGCATGAGGCACCGCTTG
TGACTTGGAAGCAGGATCGGGAAGCAGCTACGACGTGCGGGCGCCTCCAG
GCTGGTGTCCTCAGCCGGAAAGTACTGGACCGCCAGATGACACACGACGG
CGACCCTGGATATTGTCTGGCCAAGAGGGTCCGCAACCAGGTGTATTACG
ACACCTCGATTGATCTCGACTGCCACGGCAAAGGCAACCAGTGTTCGGCG
GGTACCTGCATGAAGGCCGCCTTACAGGTCTTCGCCGGAGAAGCACGCGA
CGGCATCCCGTCGGAGATTGTGCGTGCCATGTGCAAGTACTATTCTGTGC
TTGTCGAACGGGGTACGGGGACGTCTCGCGTTCCAAGTTTGTAGAGGACC
ACGGACATTAGTGGAGTGGT
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protein sequence of EsuBft2100_7a-0001

>EsuBft2100_7 ID=EsuBft2100_7|Name=EsuBft2100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=197bp
MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIIT
QHAIESPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQ
AGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSA
GTCMKAALQVFAGEARDGIPSEIVRAMCKYYSVLVERGTGTSRVPSL
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mRNA from alignment at Scaffold_100:224725..226044+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2100_7a-0001 ID=EsuBft2100_7a-0001|Name=EsuBft2100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1320bp|location=Sequence derived from alignment at Scaffold_100:224725..226044+ (Ectocarpus subulatus male Bft15b)
ATGACCGCCCGGCCTGACGGGGCTGCGGAGGAGGGCGGGGAGGATACGCT
TTTCGACGACCCCGTGGAGGTGGTCGGCGAAGAGCTCGAAGGTTTACTGC
GGCTCTCCCCCCCAAGCACGTCCAGCACGCCCGTGTTGGCCATCATCACG
CAGCACGCGATCGAGTCGCCAGAGACGATCCGCGATTTTATTGAAGAGAC
AGCAGCCAGGCTGGCGAAGGAGTCGGGATGCCAGCATGAGGCACCGCTTG
TGACTTGGAAGCAGGATCGGGAAGCAGCTACGACGTGCGGGCGCCTCCAG
GCTGGTGTCCTCAGCCGGGTGAACATGCAGGCGAGCACCCACGCAACTTC
CGATAGCGGTTACTGCTGTGGAATTATCTAACGAAGCAGAGATGCCGTAT
GCATACGTACTGGCGAGTCGAGGGCTACTGTCGACCTCGGGTATTACGAT
TACAAGAGGTATCTGGGTCAAGTGCTTTCCATACTATGTAACCCGAGTGG
ATTTGCTAAGGGAAACAGTATGGACGACAGCAGCGTTTTTTGTAGGACAA
ACGTTACGTAAGATACCACACCCCCTGGATCGATTTGCAAAGCTCGATTA
GCCCAAGACGAGGAGGAGGTACTCTCCAAACGAAATTTTTTACTAAGTCC
TCTACAGGTAGCGGATCCAGCGCAGCCGCCTTCGGCACCGCCACACTTTC
TGCTGCTTTAGAAATATTCGTTATTTCTATATCGACCCGACTTCGCGTAA
GATACCACACCAAGTATTTGCAAAGCTCAATAGCCCGTGACCAGGAGGAG
GCATTCCCTTATCGCAATTTTTTTCTAAGTCCTCGGCAGGTAGCAGATCC
AGTGCAGCCGCCTTCGGCACCGCCGCACTTGCTGCTGCTTTGGAATTATT
CGTTATTTATGTGTGCATCTGGCGACATCGTTTACATACCCTAGCCTGAC
ACCTGGCAGAACGGAATACGCTAAAACACACCAGTTTACCCCATTTATTC
CGTGCGAATGTTCCGCAGAAAGTACTGGACCGCCAGATGACACACGACGG
CGACCCTGGATATTGTCTGGCCAAGAGGGTCCGCAACCAGGTGTATTACG
ACACCTCGATTGATCTCGACTGCCACGGCAAAGGCAACCAGTGTTCGGCG
GGTACCTGCATGAAGGCCGCCTTACAGGTCTTCGCCGGAGAAGCACGCGA
CGGCATCCCGTCGGAGATTGTGCGTGCCATGTGCAAGTACTATTCTGTGC
TTGTCGAACGGGGTACGGGGACGTCTCGCGTTCCAAGTTTGTAGAGGACC
ACGGACATTAGTGGAGTGGT
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Coding sequence (CDS) from alignment at Scaffold_100:224725..226044+

>EsuBft2100_7a-0001 ID=EsuBft2100_7a-0001|Name=EsuBft2100_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=594bp|location=Sequence derived from alignment at Scaffold_100:224725..226044+ (Ectocarpus subulatus male Bft15b)
ATGACCGCCCGGCCTGACGGGGCTGCGGAGGAGGGCGGGGAGGATACGCT
TTTCGACGACCCCGTGGAGGTGGTCGGCGAAGAGCTCGAAGGTTTACTGC
GGCTCTCCCCCCCAAGCACGTCCAGCACGCCCGTGTTGGCCATCATCACG
CAGCACGCGATCGAGTCGCCAGAGACGATCCGCGATTTTATTGAAGAGAC
AGCAGCCAGGCTGGCGAAGGAGTCGGGATGCCAGCATGAGGCACCGCTTG
TGACTTGGAAGCAGGATCGGGAAGCAGCTACGACGTGCGGGCGCCTCCAG
GCTGGTGTCCTCAGCCGGAAAGTACTGGACCGCCAGATGACACACGACGG
CGACCCTGGATATTGTCTGGCCAAGAGGGTCCGCAACCAGGTGTATTACG
ACACCTCGATTGATCTCGACTGCCACGGCAAAGGCAACCAGTGTTCGGCG
GGTACCTGCATGAAGGCCGCCTTACAGGTCTTCGCCGGAGAAGCACGCGA
CGGCATCCCGTCGGAGATTGTGCGTGCCATGTGCAAGTACTATTCTGTGC
TTGTCGAACGGGGTACGGGGACGTCTCGCGTTCCAAGTTTGTAG
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