EsuBft2100_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2100_6a-0001
Unique NameEsuBft2100_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:218321..221210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2100_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length253
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_6aEsuBft2100_6aEctocarpus subulatus male Bft15bgeneScaffold_100 218321..221210 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_6a-0001-exonagat-exon-9822Ectocarpus subulatus male Bft15bexonScaffold_100 218321..219113 -
EsuBft2100_6a-0001-exonEsuBft2100_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 219472..221210 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_6a-0001-exonagat-three_prime_utr-8200Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 218321..219113 -
EsuBft2100_6a-0001-exonagat-three_prime_utr-8201Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 219472..220802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_6a-0001-cdsEsuBft2100_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 220803..221210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_6a-0001EsuBft2100_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 220803..221210 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2100_6a-0001 ID=EsuBft2100_6a-0001|Name=EsuBft2100_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2532bp|location=Sequence derived from alignment at Scaffold_100:218321..221210- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTTCGCCTAGCAGCCACCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGCACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTACGCCCGGTC
TTGATTTTATGCAACTTGACAGATTGGTGTGTCGGGCAGGTTGTATATTT
CTCAAAAGCGGGCATCCTTTGGAGAATCGAGTCTGATTGATTTTTCAGCT
CGAAACAGGTCATGATTTTGAGTTCGTGTAGGATTGCAGATGGTTGAACC
GAAGGCAGGGAGAACGTACCTGTTCGATGCAGTATTCGTGTGGAATGCAG
ATAGACAGGGAGGGCGTTGCCTGTATTTGTGTGACACCTGAAGAATCAGT
TGGTGCTGCACAGCAAGGAGTTCGTTCCATCATGTCGGAAGGATTCGTCA
GAGGCGTTGCTCGAGGTAGTAGAGCGTTGCCTAGAATTTGTAATCCGAGC
GTCTGGAGTGGTTTTATATTTGTCTTCTTGCAGTACGGCCGTTGGAATCA
TTGGTGATATGGACGGCTATTGGATTTTGTTTGAGCCGTTGGAATCTTTC
GTGATATGATCGGCGTGAGGCGTTGAATTTCTGAGGGGTTTTGATCCGGT
GGCCGGGTTTCCCCTTTACTTTTGGTTTGTCGTTGTGTTTCGGTCTTTCG
GACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCGTAAAGAACCAGGG
AGGGTGTTCGTGCGTAGAAGTAGAAAGTCGAAAAGTAGCCGTTACGTAGG
ACGCAGCTGGGACAACTTGAAGGGTATGTGCTGAGAGGCTTTGGATGATA
GTGCGGAGTCCCCGTGTTCTCTCGAGAATTGGGGCCTCTCCTCCTTCTCC
CTCTCTCCTCTCTCATGCGAGCTAATACACACAGTTAAACAGCAGCCCCA
AGTCCGCCGGTCCTTAACAGGGCTAGGGCTCA
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protein sequence of EsuBft2100_6a-0001

>EsuBft2100_6 ID=EsuBft2100_6|Name=EsuBft2100_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MTEVQEMMGMLPSLLQAESEGQGQEGSAALQEGAAGAAELGVSPSSHREL
CPAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSLRST
FGSACAQQSAAAGDTGESVTATDQSIQGRSGGECGX
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mRNA from alignment at Scaffold_100:218321..221210-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2100_6a-0001 ID=EsuBft2100_6a-0001|Name=EsuBft2100_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2890bp|location=Sequence derived from alignment at Scaffold_100:218321..221210- (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTTCGCCTAGCAGCCACCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGCACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGTGGA
AACGGGCGTGTTTCTTTTGAGAATGTTACGCTTGAAGAGTACGCCCGGTC
TTGATTTTATGCAACTTGACAGATTGGTGTGTCGGGCAGGTATGCAGTTG
TTAGTGAAAGTCGATTTTTTTTTCACGTACGGAAGCATGTTGGTTGTGTC
TGTTTTGGGAAGCGACATCTAGGTGATGGCCATGTGCGTGTTCCTCTGGG
CGCCGGTGTTGCGCAAGGGAGGGCACTAGGCTTAGGTTCCTGGTGTGCTT
GTCTATAATGCAGACAGCGTAGATGCTTGGGGTTCGTAGTACAGCGTTAC
CAAGTTGTGGGGGGGCGTTTGTGTTTTGCGTAGTTGTGCTTGAAGGTTCA
GTAGCAAGTTGATGTATCCTTGATTGAAGGAGAACTGAGGATTGATTTGG
TAGTTTGCAGATGGTGGACCTTGTTTGAAGCAGGCTACATTCGGCAGGTT
GTATATTTCTCAAAAGCGGGCATCCTTTGGAGAATCGAGTCTGATTGATT
TTTCAGCTCGAAACAGGTCATGATTTTGAGTTCGTGTAGGATTGCAGATG
GTTGAACCGAAGGCAGGGAGAACGTACCTGTTCGATGCAGTATTCGTGTG
GAATGCAGATAGACAGGGAGGGCGTTGCCTGTATTTGTGTGACACCTGAA
GAATCAGTTGGTGCTGCACAGCAAGGAGTTCGTTCCATCATGTCGGAAGG
ATTCGTCAGAGGCGTTGCTCGAGGTAGTAGAGCGTTGCCTAGAATTTGTA
ATCCGAGCGTCTGGAGTGGTTTTATATTTGTCTTCTTGCAGTACGGCCGT
TGGAATCATTGGTGATATGGACGGCTATTGGATTTTGTTTGAGCCGTTGG
AATCTTTCGTGATATGATCGGCGTGAGGCGTTGAATTTCTGAGGGGTTTT
GATCCGGTGGCCGGGTTTCCCCTTTACTTTTGGTTTGTCGTTGTGTTTCG
GTCTTTCGGACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCGTAAAG
AACCAGGGAGGGTGTTCGTGCGTAGAAGTAGAAAGTCGAAAAGTAGCCGT
TACGTAGGACGCAGCTGGGACAACTTGAAGGGTATGTGCTGAGAGGCTTT
GGATGATAGTGCGGAGTCCCCGTGTTCTCTCGAGAATTGGGGCCTCTCCT
CCTTCTCCCTCTCTCCTCTCTCATGCGAGCTAATACACACAGTTAAACAG
CAGCCCCAAGTCCGCCGGTCCTTAACAGGGCTAGGGCTCA
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Coding sequence (CDS) from alignment at Scaffold_100:218321..221210-

>EsuBft2100_6a-0001 ID=EsuBft2100_6a-0001|Name=EsuBft2100_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_100:218321..221210- (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGGCAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGAATTGGGGGTTTCGCCTAGCAGCCACCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGCGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCGCACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCGATCAATCCATTCAGGGGAGGTCGGGTGGAGAAT
GCGGNNNN
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