EsuBft2100_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2100_5a-0001
Unique NameEsuBft2100_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:216497..216840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2100_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length34
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5aEsuBft2100_5aEctocarpus subulatus male Bft15bgeneScaffold_100 216497..216840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5a-0001-exonEsuBft2100_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 216497..216840 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5a-0001-exonagat-three_prime_utr-8199Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 216497..216579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5a-0001-cdsEsuBft2100_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 216580..216804 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5a-0001-exonagat-five_prime_utr-5314Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 216805..216840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2100_5a-0001EsuBft2100_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 216580..216804 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2100_5a-0001 ID=EsuBft2100_5a-0001|Name=EsuBft2100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_100:216497..216840- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGAGGAGTACCCGTTTTTTCTTTCCCCTACCCGAACATGGCTGGGCTGTT
CGACCAAAACCTGTGCACACAAGCACACGTCAGCAGCGCCCTGCCCTCGA
ATTCGGACGTTCTGACGGCCCGCCGGGCGGAGGCAGACCCACCCCCCGCC
GGCGTTGGAAGTCTCCCTTGGGGAAACGGCAGGCGGTCTGTCTGTGCAAA
TGATCGAGAAGAAGAGCTGGAAGAATACCTCCCTCGCGAGATGCGACACA
CACGGGACTGATAATAACAAAATAGACTTTTTCTCTCCCTCCCGCTACTT
GCTAATTGGCGACAAACGAGGGCCAGTGGCGTGCGTCCGACCTG
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protein sequence of EsuBft2100_5a-0001

>EsuBft2100_5 ID=EsuBft2100_5|Name=EsuBft2100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MAGLFDQNLCTQAHVSSALPSNSDVLTARRAEADPPPAGVGSLPWGNGRR
SVCANDREEELEEYLPREMRHTRD
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mRNA from alignment at Scaffold_100:216497..216840-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2100_5a-0001 ID=EsuBft2100_5a-0001|Name=EsuBft2100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_100:216497..216840- (Ectocarpus subulatus male Bft15b)
GGAGGAGTACCCGTTTTTTCTTTCCCCTACCCGAACATGGCTGGGCTGTT
CGACCAAAACCTGTGCACACAAGCACACGTCAGCAGCGCCCTGCCCTCGA
ATTCGGACGTTCTGACGGCCCGCCGGGCGGAGGCAGACCCACCCCCCGCC
GGCGTTGGAAGTCTCCCTTGGGGAAACGGCAGGCGGTCTGTCTGTGCAAA
TGATCGAGAAGAAGAGCTGGAAGAATACCTCCCTCGCGAGATGCGACACA
CACGGGACTGATAATAACAAAATAGACTTTTTCTCTCCCTCCCGCTACTT
GCTAATTGGCGACAAACGAGGGCCAGTGGCGTGCGTCCGACCTG
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Coding sequence (CDS) from alignment at Scaffold_100:216497..216840-

>EsuBft2100_5a-0001 ID=EsuBft2100_5a-0001|Name=EsuBft2100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_100:216497..216840- (Ectocarpus subulatus male Bft15b)
ATGGCTGGGCTGTTCGACCAAAACCTGTGCACACAAGCACACGTCAGCAG
CGCCCTGCCCTCGAATTCGGACGTTCTGACGGCCCGCCGGGCGGAGGCAG
ACCCACCCCCCGCCGGCGTTGGAAGTCTCCCTTGGGGAAACGGCAGGCGG
TCTGTCTGTGCAAATGATCGAGAAGAAGAGCTGGAAGAATACCTCCCTCG
CGAGATGCGACACACACGGGACTGA
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