EsuBft2100_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2100_4a-0001
Unique Name	EsuBft2100_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:209313..210608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft2100_4
Protein domains	Coil
Protein domains	IPR000477
Protein domains	PTHR19446
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	129
Evalue	1.19e-53
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_4a	EsuBft2100_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 209313..210608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_4a-0001-exon	EsuBft2100_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 209313..210608 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_4a-0001-cds	EsuBft2100_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 209313..210608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_4a-0001	EsuBft2100_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 209313..210608 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:209313..210608+
coding sequence from alignment at Scaffold_100:209313..210608+

spliced messenger RNA

>EsuBft2100_4a-0001 ID=EsuBft2100_4a-0001|Name=EsuBft2100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1296bp|location=Sequence derived from alignment at Scaffold_100:209313..210608+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTACTATACAA
CTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTAAGGAGACAAGCTGACCCAGGAAACTACAGGGGGATC
ACACTGTTGAACACAGTAGGAAAAGTTTTCTGTAAGCTGCTGAACGATAG
GATAGTGGGAGTATTGGAGAAGGAACTTAGTGAGGGCCACGCAGGTTTCC
GAAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATC
CAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGT
GAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTATCGCATGTGCGGGATGGG
AGAGGAGAGGTTGCCGAGAATAGTATGCGAGGCTACGTGGGCAAACAAGA
AGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGG
AAGGGGCTCGACATCGAGGAAGATGAAACGCTGGAAACGGAGGGTCTACA
GGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGA
ATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATG
TTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGC
AGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAG
AACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCAAA
TGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATG
CCCGTTGAACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAA
TAGATGGGACGTATAGGGAGATGTTTGCGGCATGGAATAGAGAGGTGAGG
ACGGTAGCTGTACTGGGGCATAGAAGGTGGGTTGAAAAGGCGGCAAGGGG
TATCATTAGGAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAG

protein sequence of EsuBft2100_4a-0001

>EsuBft2100_4 ID=EsuBft2100_4|Name=EsuBft2100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=431bp
MKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLLRRQADPGNYRGI
TLLNTVGKVFCKLLNDRIVGVLEKELSEGHAGFRKKRGCVDHVFTVGRII
QGRKRAGKPTYCFFLDVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXQYRMCGMGEERLPRIVCEATWANKKRGRQPTEWVKVVEDVW
KGLDIEEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGM
LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK
CDCGFECEDRVHVVAECPLNKKEREVYVTELGKIDGTYREMFAAWNREVR
TVAVLGHRRWVEKAARGIIRREDIFEPPLAK

mRNA from alignment at Scaffold_100:209313..210608+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2100_4a-0001 ID=EsuBft2100_4a-0001|Name=EsuBft2100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1296bp|location=Sequence derived from alignment at Scaffold_100:209313..210608+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTACTATACAA
CTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTAAGGAGACAAGCTGACCCAGGAAACTACAGGGGGATC
ACACTGTTGAACACAGTAGGAAAAGTTTTCTGTAAGCTGCTGAACGATAG
GATAGTGGGAGTATTGGAGAAGGAACTTAGTGAGGGCCACGCAGGTTTCC
GAAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATC
CAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGT
GAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTATCGCATGTGCGGGATGGG
AGAGGAGAGGTTGCCGAGAATAGTATGCGAGGCTACGTGGGCAAACAAGA
AGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGG
AAGGGGCTCGACATCGAGGAAGATGAAACGCTGGAAACGGAGGGTCTACA
GGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGA
ATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATG
TTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGC
AGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAG
AACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCAAA
TGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATG
CCCGTTGAACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAA
TAGATGGGACGTATAGGGAGATGTTTGCGGCATGGAATAGAGAGGTGAGG
ACGGTAGCTGTACTGGGGCATAGAAGGTGGGTTGAAAAGGCGGCAAGGGG
TATCATTAGGAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAG

Coding sequence (CDS) from alignment at Scaffold_100:209313..210608+

>EsuBft2100_4a-0001 ID=EsuBft2100_4a-0001|Name=EsuBft2100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1296bp|location=Sequence derived from alignment at Scaffold_100:209313..210608+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTACTATACAA
CTGGGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGG
TTGTGAACTTGTTAAGGAGACAAGCTGACCCAGGAAACTACAGGGGGATC
ACACTGTTGAACACAGTAGGAAAAGTTTTCTGTAAGCTGCTGAACGATAG
GATAGTGGGAGTATTGGAGAAGGAACTTAGTGAGGGCCACGCAGGTTTCC
GAAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATC
CAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGT
GAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTATCGCATGTGCGGGATGGG
AGAGGAGAGGTTGCCGAGAATAGTATGCGAGGCTACGTGGGCAAACAAGA
AGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGG
AAGGGGCTCGACATCGAGGAAGATGAAACGCTGGAAACGGAGGGTCTACA
GGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGA
ATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATG
TTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGC
AGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAG
AACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCAAA
TGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATG
CCCGTTGAACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAA
TAGATGGGACGTATAGGGAGATGTTTGCGGCATGGAATAGAGAGGTGAGG
ACGGTAGCTGTACTGGGGCATAGAAGGTGGGTTGAAAAGGCGGCAAGGGG
TATCATTAGGAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAG