EsuBft2100_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2100_3a-0001
Unique Name	EsuBft2100_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:204973..208460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2100_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	348
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_3a	EsuBft2100_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 204973..208460 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_3a-0001-exon	EsuBft2100_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 204973..208460 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_3a-0001-exon	agat-three_prime_utr-8198	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 204973..208271 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_3a-0001-cds	EsuBft2100_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 208272..208460 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2100_3a-0001	EsuBft2100_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 208272..208460 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:204973..208460-
coding sequence from alignment at Scaffold_100:204973..208460-

spliced messenger RNA

>EsuBft2100_3a-0001 ID=EsuBft2100_3a-0001|Name=EsuBft2100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3488bp|location=Sequence derived from alignment at Scaffold_100:204973..208460- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTATCGCGTTCGCTTGTCTTTTCCGTTCGACAAACGAACGCAGG
CGGCAAGACCGACCTCTCTGGCCCCGAGGTCTCGAACGAGGGCGACGAGG
AGATACTGGTTCGCGAGACGCCCTTCGACCGCCCCGATGTCGTCGAGGCG
AGCGACCTCGAGGAGTACCTCAGCAACATGTCGCCCTAAGTTCAGGGCGA
TATGTTGTTGAGGTACGGGTTAAACGCCGCCGAAGTTCAGGGCGACATTT
TGAGGTATCCCTCGAGGTCGCTCGCCTCGACGATAACATCGTCGGGGCGG
TCGAAGGGCGCCGGCAGCTTTTGTCTCCACACAAGTATGCCTGACAAGTT
TTGGAGTGGGTTTCGAAGGGGGGAGGCTTTAACCTCGAAGTTGCTGTTGG
TATTGCTTTGCGCGGAGTTAATGTGTTGGCACTCACAAAGCTTCACTGCT
GGGTTGTCTCATGTCCCCCAGGGGGTTGATGCAGTTATGATATCCACGCC
CTGTCGCGCGGGATGGCATCATCCTGCACACCCGACCTCACCTCTGCGCT
CTTTTTGTACGATTATTTTGGATGCGTCGGAGCTACATGTATTTTACACA
CCGGCGACGTATCACGTCCCGCAATGTAGACCTGCGCGACGTTCGTGGTG
ATGGTGAATGATGCATGTTGCTCAGGATGTAGGCTGTTGCGCTGTGGCCT
GGTTGGTCAACACGGCAGCGTTTGTTTGTTGCTTTTTTTTTCTGTGTGAT
CTACTTCTGCATTTTAGTGAAGTAGGCGGTCGGTGGCGGGGTCTTTTTTC
GCGTCTGTCTGTGACCGACGGCGGGAGCCTTCGCCGGGCTTCGGGGGGGG
GGCTTGTTCTTGAAACCTAGGTGAATCTCTGGGGCGGGTACATGTCAGTA
GTAGTCTTGTCAGATGACATCAGTTTGTACCTTGGTGATCATGATGATGT
GATGATACCTTTGGTCGAGTAAAATATGCTGTTGGGATGGCGCTTGGCGC
GTCCCCCACACAGCGTTTTCGGTCTTTGTCTTCCATGTTTTTGCTTCTCT
CCAATGGGGGTCGTTGAATGCGTCGTCAAAAATCCACGTCGTTTCTCATG
GCGTCACGTCCCGGAGTGAGTGTCGGATTATGCTTTTTGCTTTTCCTGTA
TACCTTTGATGCATGTCTCGCGTAGCTCTCGAGTAGAGTAGTGTTGTGCG
CGTCATACATATACGAAACGGAGAGGGCATTGTATCACTAGGTACACTTC
GCTGTTTTGTGTACGGAGGGTCGAGATCCGTTGAATGAGGGAGAATCTTC
GGACAGATGGATCGGTGTGTCATGGATTTGATACTAGCGCCGGCTGTTCC
TGTCGGTCTATACTCTGGCGTATACTTTGTCATCCTTCGTGTTTCCTGTT
TTCGTATCAAGCATGTAGCCGGTGCTGCGGGAGTCACTGTAACCGTAGGA
AACAGAGAAAATGAAACCGTTTCGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGTTGC
CGAAAACCCTTGGCAGGATGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCA
CTTCGTGAACTCGGCAACAAGGTTACCGGCTTTTGTTTTACCTCCGGTTT
TTTTTTTGCGGTAACCATAGTGGTGGTCGAGTAGATCATGTTGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATGCGAGG
TCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCCC
CAAGGTGCACAGCCGGCTTCACCCTGCCATGGTTGTTAGGCCTTGCCCTG
ACAAGGTACCAGGACACCCCGGCCCTGTTAAGGTGATAACCTAAGCGACA
TCTTGTCAAGGTCGTAACCCTGGGAACACCTTGCCATATGGCACCCTGTA
TGGGTGCAAAATCTGGTCCCCTGTATGAGGTTCTCCCCCGGATCCCTGCA
GGGGTAGCCGATTGGCTACGGGTGTATTCAGCTCGTCGGAAACCTGATGC
GTAGTCTAGACATGGTAGTTGTTTCCTCGTATTTTTTTCATCTCGCGGGC
GACTTAATATGTTCTCACGACCTTGCTCCCATGGTACACATACTACTACA
TGCGTTACTATATTACGGAAATGGGCAATAACCAACCAACCATTTAGTAA
CACACAAAAAGCATGAGATCTTTCGTCACCCTCGGGAGACATGACACCCA
CATTCCGAAGGGCAACCTTGCAATGATAAATGTCTCAAGTTAGACTACAC
CCCCTGTGCAGACGCACAGTTGTTATAGTGTCCCCTAGAGATGCAGTTAG
GTCTAGTTCCGGTCGACCTCACACATCTGTCAGTTGTTGCACTCTACACT
TCTACACTAGTCTATTATTTATTTATTTATTTTTGCCTTCCGACAATTGC
AGATGTACCTCAGAAAACTTTCACTTAATGTCTCATACTCTACATGAATA
TTAAACCAATACGAAGTACAACAACATATGTAGGACTTATTTCTACTGTC
ATTTACATCGTAAAAGTATCTCCTCTTCAACTTACCAATGACAATCCTGA
TGGTATCCTATATGCGTTCGTAAGCTTGCTAAAATACTACTGCGTTGATG
TCCGCTTGTAAAAGCTGAAATCCAACAAATGCTTTGATCCATGCTACATC
TCCGTGTTGGAAAAGCCCTTTCATCTCCGTTCATGATAACATCTTACCCT
ATTCTACGCAAATCTGTCACATCTACTCTCAAACAAGACGTCAACTTCAA
ACGAAAACGCGTTCTACGATGCGTCTACACTCCATCCCCATATCATTGGC
GTTGACTGGTCCGAGGTCGATCTTGTTCGCCTGTTTTC

protein sequence of EsuBft2100_3a-0001

>EsuBft2100_3 ID=EsuBft2100_3|Name=EsuBft2100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=62bp
MTLSRSLVFSVRQTNAGGKTDLSGPEVSNEGDEEILVRETPFDRPDVVEA
SDLEEYLSNMSP

mRNA from alignment at Scaffold_100:204973..208460-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2100_3a-0001 ID=EsuBft2100_3a-0001|Name=EsuBft2100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3488bp|location=Sequence derived from alignment at Scaffold_100:204973..208460- (Ectocarpus subulatus male Bft15b)
ATGACGTTATCGCGTTCGCTTGTCTTTTCCGTTCGACAAACGAACGCAGG
CGGCAAGACCGACCTCTCTGGCCCCGAGGTCTCGAACGAGGGCGACGAGG
AGATACTGGTTCGCGAGACGCCCTTCGACCGCCCCGATGTCGTCGAGGCG
AGCGACCTCGAGGAGTACCTCAGCAACATGTCGCCCTAAGTTCAGGGCGA
TATGTTGTTGAGGTACGGGTTAAACGCCGCCGAAGTTCAGGGCGACATTT
TGAGGTATCCCTCGAGGTCGCTCGCCTCGACGATAACATCGTCGGGGCGG
TCGAAGGGCGCCGGCAGCTTTTGTCTCCACACAAGTATGCCTGACAAGTT
TTGGAGTGGGTTTCGAAGGGGGGAGGCTTTAACCTCGAAGTTGCTGTTGG
TATTGCTTTGCGCGGAGTTAATGTGTTGGCACTCACAAAGCTTCACTGCT
GGGTTGTCTCATGTCCCCCAGGGGGTTGATGCAGTTATGATATCCACGCC
CTGTCGCGCGGGATGGCATCATCCTGCACACCCGACCTCACCTCTGCGCT
CTTTTTGTACGATTATTTTGGATGCGTCGGAGCTACATGTATTTTACACA
CCGGCGACGTATCACGTCCCGCAATGTAGACCTGCGCGACGTTCGTGGTG
ATGGTGAATGATGCATGTTGCTCAGGATGTAGGCTGTTGCGCTGTGGCCT
GGTTGGTCAACACGGCAGCGTTTGTTTGTTGCTTTTTTTTTCTGTGTGAT
CTACTTCTGCATTTTAGTGAAGTAGGCGGTCGGTGGCGGGGTCTTTTTTC
GCGTCTGTCTGTGACCGACGGCGGGAGCCTTCGCCGGGCTTCGGGGGGGG
GGCTTGTTCTTGAAACCTAGGTGAATCTCTGGGGCGGGTACATGTCAGTA
GTAGTCTTGTCAGATGACATCAGTTTGTACCTTGGTGATCATGATGATGT
GATGATACCTTTGGTCGAGTAAAATATGCTGTTGGGATGGCGCTTGGCGC
GTCCCCCACACAGCGTTTTCGGTCTTTGTCTTCCATGTTTTTGCTTCTCT
CCAATGGGGGTCGTTGAATGCGTCGTCAAAAATCCACGTCGTTTCTCATG
GCGTCACGTCCCGGAGTGAGTGTCGGATTATGCTTTTTGCTTTTCCTGTA
TACCTTTGATGCATGTCTCGCGTAGCTCTCGAGTAGAGTAGTGTTGTGCG
CGTCATACATATACGAAACGGAGAGGGCATTGTATCACTAGGTACACTTC
GCTGTTTTGTGTACGGAGGGTCGAGATCCGTTGAATGAGGGAGAATCTTC
GGACAGATGGATCGGTGTGTCATGGATTTGATACTAGCGCCGGCTGTTCC
TGTCGGTCTATACTCTGGCGTATACTTTGTCATCCTTCGTGTTTCCTGTT
TTCGTATCAAGCATGTAGCCGGTGCTGCGGGAGTCACTGTAACCGTAGGA
AACAGAGAAAATGAAACCGTTTCGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGTTGC
CGAAAACCCTTGGCAGGATGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCA
CTTCGTGAACTCGGCAACAAGGTTACCGGCTTTTGTTTTACCTCCGGTTT
TTTTTTTGCGGTAACCATAGTGGTGGTCGAGTAGATCATGTTGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATGCGAGG
TCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCCC
CAAGGTGCACAGCCGGCTTCACCCTGCCATGGTTGTTAGGCCTTGCCCTG
ACAAGGTACCAGGACACCCCGGCCCTGTTAAGGTGATAACCTAAGCGACA
TCTTGTCAAGGTCGTAACCCTGGGAACACCTTGCCATATGGCACCCTGTA
TGGGTGCAAAATCTGGTCCCCTGTATGAGGTTCTCCCCCGGATCCCTGCA
GGGGTAGCCGATTGGCTACGGGTGTATTCAGCTCGTCGGAAACCTGATGC
GTAGTCTAGACATGGTAGTTGTTTCCTCGTATTTTTTTCATCTCGCGGGC
GACTTAATATGTTCTCACGACCTTGCTCCCATGGTACACATACTACTACA
TGCGTTACTATATTACGGAAATGGGCAATAACCAACCAACCATTTAGTAA
CACACAAAAAGCATGAGATCTTTCGTCACCCTCGGGAGACATGACACCCA
CATTCCGAAGGGCAACCTTGCAATGATAAATGTCTCAAGTTAGACTACAC
CCCCTGTGCAGACGCACAGTTGTTATAGTGTCCCCTAGAGATGCAGTTAG
GTCTAGTTCCGGTCGACCTCACACATCTGTCAGTTGTTGCACTCTACACT
TCTACACTAGTCTATTATTTATTTATTTATTTTTGCCTTCCGACAATTGC
AGATGTACCTCAGAAAACTTTCACTTAATGTCTCATACTCTACATGAATA
TTAAACCAATACGAAGTACAACAACATATGTAGGACTTATTTCTACTGTC
ATTTACATCGTAAAAGTATCTCCTCTTCAACTTACCAATGACAATCCTGA
TGGTATCCTATATGCGTTCGTAAGCTTGCTAAAATACTACTGCGTTGATG
TCCGCTTGTAAAAGCTGAAATCCAACAAATGCTTTGATCCATGCTACATC
TCCGTGTTGGAAAAGCCCTTTCATCTCCGTTCATGATAACATCTTACCCT
ATTCTACGCAAATCTGTCACATCTACTCTCAAACAAGACGTCAACTTCAA
ACGAAAACGCGTTCTACGATGCGTCTACACTCCATCCCCATATCATTGGC
GTTGACTGGTCCGAGGTCGATCTTGTTCGCCTGTTTTC

Coding sequence (CDS) from alignment at Scaffold_100:204973..208460-

>EsuBft2100_3a-0001 ID=EsuBft2100_3a-0001|Name=EsuBft2100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=189bp|location=Sequence derived from alignment at Scaffold_100:204973..208460- (Ectocarpus subulatus male Bft15b)
ATGACGTTATCGCGTTCGCTTGTCTTTTCCGTTCGACAAACGAACGCAGG
CGGCAAGACCGACCTCTCTGGCCCCGAGGTCTCGAACGAGGGCGACGAGG
AGATACTGGTTCGCGAGACGCCCTTCGACCGCCCCGATGTCGTCGAGGCG
AGCGACCTCGAGGAGTACCTCAGCAACATGTCGCCCTAA