EsuBft207_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_18a-0001
Unique NameEsuBft207_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:165158..168715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft207_18
Protein domainsIPR001878
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18aEsuBft207_18aEctocarpus subulatus male Bft15bgeneScaffold_358 165158..168715 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18a-0001-exonagat-exon-57903Ectocarpus subulatus male Bft15bexonScaffold_358 165158..165666 +
EsuBft207_18a-0001-exonEsuBft207_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 168676..168715 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18a-0001-exonagat-five_prime_utr-5249Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 165158..165197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18a-0001-cdsEsuBft207_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 165198..165666 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18a-0001-exonagat-three_prime_utr-8079Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 168684..168715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_18a-0001EsuBft207_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 165198..168683 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAGATTCGTGTGCAGGAGGACAAACTGAAATCATTGCGCATGCGTACAA
ACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGACGCTTGGTGTT
TTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGTGCACACTGAT
GCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAGACTCTTGTAG
TGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGTACGTGAGCGT
TACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACAGCGCAGCTCT
TGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATTCACGCAAAGC
CGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGACGTTTCAGGGA
ACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGGACTGCCTGGC
TCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAGAACAGGGAGG
ATAAGACCGGTCCGTGATGGAGGATGAGGGGGCAGGAGATGTGCCGTTT
back to top

protein sequence of EsuBft207_18a-0001

>EsuBft207_18 ID=EsuBft207_18|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=158bp
MRTNENPSTFFASMRETLGVLQMLKVKKEDREVCTLMLEGLFHEYKTLRE
TLVVFCPNDPAFIETNVRERYLDLQTQTGAKKHSAALVSRAERKRSRKPI
HAKPKSRPESDSSKKKTFQGTCFKCGEKGHMRTDCLARVIAHPSQTGKSE
NREDKTGP
back to top

mRNA from alignment at Scaffold_358:165158..168715+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3558bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)
TCAGATTCGTGTGCAGGAGGACAAACTGAAATCATTGCGCATGCGTACAA
ACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGACGCTTGGTGTT
TTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGTGCACACTGAT
GCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAGACTCTTGTAG
TGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGTACGTGAGCGT
TACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACAGCGCAGCTCT
TGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATTCACGCAAAGC
CGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGACGTTTCAGGGA
ACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGGACTGCCTGGC
TCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAGAACAGGGAGG
ATAAGACCGGTGAGGAGTTCGAATGGGAGTGGTCTGATTCCGAGTTGGCT
AGGTCATCTGAATTGCTGTTGCTGCATCAACAAGCCGATTGAAAATCGGC
AATCCCGTAGACTGCCAAAACTGGCGCCGGGAGCATTTCCTGCTGAGATT
AGCAAATACCTTTAGTGGAAGAATAGTCATGTCGAAGATTGGTATGCGGA
CACCGGAACTGCTTTTTGACTGACCGTCTTTCTTGCATGAAGGATTTGAA
GCCTTGCCACAAAAACGTAAACGGGACCGGTGGCGTGACTTGTGAGGTAG
AATTCTCTGGAACCCTAGAATTGGTGTTTGTGAATGCTGACAGCGAGTTT
TCCGTAGAGTTGGAGAATGTACTGTACTCTCCCAACTTGGGATACAACCT
TTTTACTCCAAGCGCGGAGTTTGATGGTGAGTCATGGAATTACCTTGGGG
GTCCTGATGGTGTGATGACAGCTTTCGATGGACATGTTACTTTTGAGGAT
TTCGATGGCATGCTCATTTCGACTGCGTATCGTTTAGAGAACAACCCTGT
TGGTTCGGTGTTAGCTGCCCTCACTCCTTCAAACCCCAAGCATGAATCTA
AGATGGATGTGAACGAGTTTCATAACATTTATGCTCATTCGCATGAAGGA
TTGCTCCGTACAACTGCAAAGCGACTAGGTATCGAGTTGACCGGTAAAAT
GCATGCTTGTACGGGATGTTCGATGTCGAAGGCATTCAAGAAAGGGATTG
CTCATGAAACAAAATGCAGATCAGACAAAAAGTTGGGCAGAGTTTTTGTT
GACCTGGGAGGGCGGAAGGACGTTGCGTCCGTAGGGGGTAAACATTACCC
CATGATAGTGAAGGATGATTTCACTAGACGTACATGGATGTATTTCCTGA
AAAGTAAATCAGACGCTGCGAGTGCTTTCCGGAGTTTCCTTGCAAGTGTG
CGTGCTGATGGTATCCCGTCATTGGTTGAGATTGTTAGATCTGACAATGG
GGGGGAGTTTTTCGGAGGAGAATTTGCGTCCGTGTGCAACGAGCTCTTGA
TTAAGCAAGAGTTCACCCCGGCTTACAGTCCCCAATACAACGGTGTTGCA
GAGCGTGGTTTGGGATTGATTGAGGCGGCGGCAATGGCGGCCCGTGTTTA
GGCAAAAGTTTTGTTTGGGCATGTGCAGTTACCTAAGACTGACAGACTCT
GGGCTGAGGCCATGCACTGGGCTTGCGAAGCACTTAACCGCACAGCTTGT
TCCGCTAGCCCCGATAGGAAGTCGCCGTATGAGATGTGGCATGGTGAAGC
TAGTCCTACTAGACCGTATCCGTTTGAAACCGGCTTACAGTAGGTGGCAG
CCACCGTCTACGCTGCTGCCGAAGGGTGAGGCTTGCTTTTATGTCGGTCC
TTCGAGAGACCACCCGCGTGACTGTCATAGAGTACTTACGAGGGTTTGAA
CTATTCAGGAAACGAGGAATGTGACGTGGGAAGCGTTGCCGTCACAACTC
CCTCCACCGCAACCGTCCCTCTTGCCGATTGAGGTAGCAGAGGAGGGAGG
GGAGGAACCTGACGACGATGTAGAAGCTGAGGTATGGCCGCATTTAGGGA
GAGGAGTCCCCCACATTCTTTTGCGACGTAATGTAACGGTCTCCGGTTGA
GCAATCGATGAGGTTGGCAGTGTTGATGCAGGCAGTGTAGGTCAACCCCC
CTCTGTGCCATCTTCGCCCGCGATTATTTCCCCCAGTAGCGCAGCCCCCC
CTGTGTCTTCTCCAGCAGACGAGTTCACCGACGAGGAAGGACAGGGAGGG
CCGGAGACAGGGGAGGCAGAATCGGCGGGTCCGGGAGGGCAGGAGTAGAG
TCGGAGAGTCAGGAAGGGTTGGATGAAGAGTTGGTTGAGCCGGGAGGGCA
GGAGGTAGAATCGGAGTCATTTCCCCCTGCTACGCACGTACCATCTAATC
GTCGTGCGCGGCATGAGCTCGTTAGTTACAACACTGCTGCGAATGAGAAT
GTTGAAGTCAGAGAAGGCAGAACCCGTGCGCAAACTCGGGCAGTAAATCA
GCAGAGCGTAACCGGCCTCATGGCCACTCTAGGACCCATCTCCGCATGAG
AAATAATAGAGGCACTCTTAGTGGAACAGAGAGCATCTGATGCAATGGAA
TTGCCGAAAGTGCTCATTCAGGACGTAGAGTCAGAACCAGGTAGCTATAA
AGAAGCCCGTCAGTCAAAATACTCCTCGATTTAGGACAAGGCCATGTCTG
CAGAATCTGAAGGCTTGTTAAGAGCAGGAACGCTCGCGTTAGCAGTGAAG
GTTCCAATAGGCTGTAACGTGATAGATGCTAGATGGGTCTACAAATGGAA
AGCAGATTAAACAGGGAAGATAGTGAAGGCCAAGGCTAGGCTTGTAGCGA
AGGGCTTCAAGCAGAAGCATGGTGTGGATTATCGTGAGACTTCTTCGCCC
ACTGCAAATGCTGCATCGATTCGTTTGTTGGTAGCATTGGCGTGCAAGTA
TGATTTGGAATTTCTCCACTTTGACATTGAGCAAGCGTTGTTCAGTCGGA
ATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTGCGAGTCGATGA
CAGGAAAGGTAGTCCGTTTAGACAAAAGTTTGTATGGACTGAGACAGGCA
TCTAGAACATTTCACAAGAGCCTTGTGTCGGACCTGAAGAGGATTGGTTT
CGAACAGTCTCTGTCAGACCCCTGTGTTCTTCGTTTCATGATGGGAGACG
AGGTGTTGGGTATGATTGCGATTCATGTGGATGACATTCTGGATGCAGGA
ATTGAGAGGCTTGCCAAGATGGTTGTGGAAGCGCTAGGTGACTCTCTCCC
CACGAAGAATTTGGGCGAGGTCAGGTTCTTTCTTGGTTGCGCATTCGTTC
GCGACCGCGAGGCTGGTACGATTGAGATATCTCAAGAGAGTTACATCAGG
AGTATTCTTGAGAGATTCAATGTTTGTCGCACCAGCACGATCCCTGCTTC
CCCTGCTAACGATTACAGGTCCGTGATGGAGGATGAGGGGGCAGGAGATG
TGCCGTTT
back to top

Coding sequence (CDS) from alignment at Scaffold_358:165158..168715+

>EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)
ATGCGTACAAACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGAC
GCTTGGTGTTTTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGT
GCACACTGATGCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAG
ACTCTTGTAGTGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGT
ACGTGAGCGTTACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACA
GCGCAGCTCTTGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATT
CACGCAAAGCCGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGAC
GTTTCAGGGAACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGG
ACTGCCTGGCTCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAG
AACAGGGAGGATAAGACCGGTCCGTGA
back to top