Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft207_18 |
| Protein domains | IPR001878 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 54 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCAGATTCGTGTGCAGGAGGACAAACTGAAATCATTGCGCATGCGTACAA
ACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGACGCTTGGTGTT
TTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGTGCACACTGAT
GCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAGACTCTTGTAG
TGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGTACGTGAGCGT
TACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACAGCGCAGCTCT
TGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATTCACGCAAAGC
CGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGACGTTTCAGGGA
ACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGGACTGCCTGGC
TCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAGAACAGGGAGG
ATAAGACCGGTCCGTGATGGAGGATGAGGGGGCAGGAGATGTGCCGTTT back to topprotein sequence of EsuBft207_18a-0001 >EsuBft207_18 ID=EsuBft207_18|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=158bp
MRTNENPSTFFASMRETLGVLQMLKVKKEDREVCTLMLEGLFHEYKTLRE
TLVVFCPNDPAFIETNVRERYLDLQTQTGAKKHSAALVSRAERKRSRKPI
HAKPKSRPESDSSKKKTFQGTCFKCGEKGHMRTDCLARVIAHPSQTGKSE
NREDKTGP back to topmRNA from alignment at Scaffold_358:165158..168715+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3558bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)
TCAGATTCGTGTGCAGGAGGACAAACTGAAATCATTGCGCATGCGTACAA
ACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGACGCTTGGTGTT
TTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGTGCACACTGAT
GCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAGACTCTTGTAG
TGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGTACGTGAGCGT
TACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACAGCGCAGCTCT
TGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATTCACGCAAAGC
CGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGACGTTTCAGGGA
ACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGGACTGCCTGGC
TCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAGAACAGGGAGG
ATAAGACCGGTGAGGAGTTCGAATGGGAGTGGTCTGATTCCGAGTTGGCT
AGGTCATCTGAATTGCTGTTGCTGCATCAACAAGCCGATTGAAAATCGGC
AATCCCGTAGACTGCCAAAACTGGCGCCGGGAGCATTTCCTGCTGAGATT
AGCAAATACCTTTAGTGGAAGAATAGTCATGTCGAAGATTGGTATGCGGA
CACCGGAACTGCTTTTTGACTGACCGTCTTTCTTGCATGAAGGATTTGAA
GCCTTGCCACAAAAACGTAAACGGGACCGGTGGCGTGACTTGTGAGGTAG
AATTCTCTGGAACCCTAGAATTGGTGTTTGTGAATGCTGACAGCGAGTTT
TCCGTAGAGTTGGAGAATGTACTGTACTCTCCCAACTTGGGATACAACCT
TTTTACTCCAAGCGCGGAGTTTGATGGTGAGTCATGGAATTACCTTGGGG
GTCCTGATGGTGTGATGACAGCTTTCGATGGACATGTTACTTTTGAGGAT
TTCGATGGCATGCTCATTTCGACTGCGTATCGTTTAGAGAACAACCCTGT
TGGTTCGGTGTTAGCTGCCCTCACTCCTTCAAACCCCAAGCATGAATCTA
AGATGGATGTGAACGAGTTTCATAACATTTATGCTCATTCGCATGAAGGA
TTGCTCCGTACAACTGCAAAGCGACTAGGTATCGAGTTGACCGGTAAAAT
GCATGCTTGTACGGGATGTTCGATGTCGAAGGCATTCAAGAAAGGGATTG
CTCATGAAACAAAATGCAGATCAGACAAAAAGTTGGGCAGAGTTTTTGTT
GACCTGGGAGGGCGGAAGGACGTTGCGTCCGTAGGGGGTAAACATTACCC
CATGATAGTGAAGGATGATTTCACTAGACGTACATGGATGTATTTCCTGA
AAAGTAAATCAGACGCTGCGAGTGCTTTCCGGAGTTTCCTTGCAAGTGTG
CGTGCTGATGGTATCCCGTCATTGGTTGAGATTGTTAGATCTGACAATGG
GGGGGAGTTTTTCGGAGGAGAATTTGCGTCCGTGTGCAACGAGCTCTTGA
TTAAGCAAGAGTTCACCCCGGCTTACAGTCCCCAATACAACGGTGTTGCA
GAGCGTGGTTTGGGATTGATTGAGGCGGCGGCAATGGCGGCCCGTGTTTA
GGCAAAAGTTTTGTTTGGGCATGTGCAGTTACCTAAGACTGACAGACTCT
GGGCTGAGGCCATGCACTGGGCTTGCGAAGCACTTAACCGCACAGCTTGT
TCCGCTAGCCCCGATAGGAAGTCGCCGTATGAGATGTGGCATGGTGAAGC
TAGTCCTACTAGACCGTATCCGTTTGAAACCGGCTTACAGTAGGTGGCAG
CCACCGTCTACGCTGCTGCCGAAGGGTGAGGCTTGCTTTTATGTCGGTCC
TTCGAGAGACCACCCGCGTGACTGTCATAGAGTACTTACGAGGGTTTGAA
CTATTCAGGAAACGAGGAATGTGACGTGGGAAGCGTTGCCGTCACAACTC
CCTCCACCGCAACCGTCCCTCTTGCCGATTGAGGTAGCAGAGGAGGGAGG
GGAGGAACCTGACGACGATGTAGAAGCTGAGGTATGGCCGCATTTAGGGA
GAGGAGTCCCCCACATTCTTTTGCGACGTAATGTAACGGTCTCCGGTTGA
GCAATCGATGAGGTTGGCAGTGTTGATGCAGGCAGTGTAGGTCAACCCCC
CTCTGTGCCATCTTCGCCCGCGATTATTTCCCCCAGTAGCGCAGCCCCCC
CTGTGTCTTCTCCAGCAGACGAGTTCACCGACGAGGAAGGACAGGGAGGG
CCGGAGACAGGGGAGGCAGAATCGGCGGGTCCGGGAGGGCAGGAGTAGAG
TCGGAGAGTCAGGAAGGGTTGGATGAAGAGTTGGTTGAGCCGGGAGGGCA
GGAGGTAGAATCGGAGTCATTTCCCCCTGCTACGCACGTACCATCTAATC
GTCGTGCGCGGCATGAGCTCGTTAGTTACAACACTGCTGCGAATGAGAAT
GTTGAAGTCAGAGAAGGCAGAACCCGTGCGCAAACTCGGGCAGTAAATCA
GCAGAGCGTAACCGGCCTCATGGCCACTCTAGGACCCATCTCCGCATGAG
AAATAATAGAGGCACTCTTAGTGGAACAGAGAGCATCTGATGCAATGGAA
TTGCCGAAAGTGCTCATTCAGGACGTAGAGTCAGAACCAGGTAGCTATAA
AGAAGCCCGTCAGTCAAAATACTCCTCGATTTAGGACAAGGCCATGTCTG
CAGAATCTGAAGGCTTGTTAAGAGCAGGAACGCTCGCGTTAGCAGTGAAG
GTTCCAATAGGCTGTAACGTGATAGATGCTAGATGGGTCTACAAATGGAA
AGCAGATTAAACAGGGAAGATAGTGAAGGCCAAGGCTAGGCTTGTAGCGA
AGGGCTTCAAGCAGAAGCATGGTGTGGATTATCGTGAGACTTCTTCGCCC
ACTGCAAATGCTGCATCGATTCGTTTGTTGGTAGCATTGGCGTGCAAGTA
TGATTTGGAATTTCTCCACTTTGACATTGAGCAAGCGTTGTTCAGTCGGA
ATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTGCGAGTCGATGA
CAGGAAAGGTAGTCCGTTTAGACAAAAGTTTGTATGGACTGAGACAGGCA
TCTAGAACATTTCACAAGAGCCTTGTGTCGGACCTGAAGAGGATTGGTTT
CGAACAGTCTCTGTCAGACCCCTGTGTTCTTCGTTTCATGATGGGAGACG
AGGTGTTGGGTATGATTGCGATTCATGTGGATGACATTCTGGATGCAGGA
ATTGAGAGGCTTGCCAAGATGGTTGTGGAAGCGCTAGGTGACTCTCTCCC
CACGAAGAATTTGGGCGAGGTCAGGTTCTTTCTTGGTTGCGCATTCGTTC
GCGACCGCGAGGCTGGTACGATTGAGATATCTCAAGAGAGTTACATCAGG
AGTATTCTTGAGAGATTCAATGTTTGTCGCACCAGCACGATCCCTGCTTC
CCCTGCTAACGATTACAGGTCCGTGATGGAGGATGAGGGGGCAGGAGATG
TGCCGTTT back to topCoding sequence (CDS) from alignment at Scaffold_358:165158..168715+ >EsuBft207_18a-0001 ID=EsuBft207_18a-0001|Name=EsuBft207_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_358:165158..168715+ (Ectocarpus subulatus male Bft15b)
ATGCGTACAAACGAGAACCCATCCACCTTCTTTGCATCCATGAGAGAGAC
GCTTGGTGTTTTGCAGATGCTGAAAGTCAAGAAGGAGGACAGAGAGGTGT
GCACACTGATGCTAGAAGGACTATTCCACGAATACAAGACTTTGCGTGAG
ACTCTTGTAGTGTTTTGCCCGAACGATCCTGCTTTCATCGAGACCAACGT
ACGTGAGCGTTACCTAGACTTGCAGACACAGACTGGTGCGAAGAAGCACA
GCGCAGCTCTTGTGTCTAGAGCAGAGAGGAAGAGAAGCCGGAAGCCAATT
CACGCAAAGCCGAAGTCTCGCCCTGAATCTGATTCCTCCAAGAAGAAGAC
GTTTCAGGGAACGTGTTTCAAGTGTGGGGAGAAAGGTCACATGAGGACGG
ACTGCCTGGCTCGTGTGATCGCTCATCCCTCCCAGACTGGGAAATCCGAG
AACAGGGAGGATAAGACCGGTCCGTGA back to top
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