EsuBft2068_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2068_2a-0001
Unique NameEsuBft2068_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:302..691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTS8
ProteomeIdEsuBft2068_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length39
Hectar predicted targeting categoryother localisation
Evalue6.05e-21
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
Ec32 ortholog descriptionSerine/threonine protein kinase
Ec32 orthologEc-14_001790.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
EC2.8.1.8
Descriptionprotein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2068_2aEsuBft2068_2aEctocarpus subulatus male Bft15bgeneScaffold_284 302..691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2068_2a-0001-exonEsuBft2068_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 302..691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2068_2a-0001-cdsEsuBft2068_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 302..691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2068_2a-0001EsuBft2068_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 302..691 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2068_2a-0001 ID=EsuBft2068_2a-0001|Name=EsuBft2068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=390bp|location=Sequence derived from alignment at Scaffold_284:302..691- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGTCACAGGTCGGCCCCAACCCCCAAGCAACGCACGCCGACCAC
GAGGACCGTTCCCGAACCAGTCCTCCTCCAACAGCCCAAGCAGCCGGCTA
CATCGCATGCGGCGGCACCCACGGCGCCAGTGGCCGCGGGTACCAGCACC
TCTGGTTCCACTGCTGACGACGATGATGCCAGAGGCCCGCTTGGCTTTCC
CGAGCCGAGCTTCTCGCCGGTCCTCAAGGTCGTCGACTGCGACAGCTTCA
CCCTAGTCTCACAAGCGACTGGGCGCCGCTGGAGGGCGATCGACTCCTCT
AGGGAGTGCCAGTTCGGGGAGGTACTGCGTGCTGTAGAGCTGTCAGACGA
AGCTGGGGCACGGCCGGGGTACTTCGCTATCAAGGTATGA
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protein sequence of EsuBft2068_2a-0001

>EsuBft2068_2 ID=EsuBft2068_2|Name=EsuBft2068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MKRHRSAPTPKQRTPTTRTVPEPVLLQQPKQPATSHAAAPTAPVAAGTST
SGSTADDDDARGPLGFPEPSFSPVLKVVDCDSFTLVSQATGRRWRAIDSS
RECQFGEVLRAVELSDEAGARPGYFAIKV
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mRNA from alignment at Scaffold_284:302..691-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2068_2a-0001 ID=EsuBft2068_2a-0001|Name=EsuBft2068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=390bp|location=Sequence derived from alignment at Scaffold_284:302..691- (Ectocarpus subulatus male Bft15b)
ATGAAGCGTCACAGGTCGGCCCCAACCCCCAAGCAACGCACGCCGACCAC
GAGGACCGTTCCCGAACCAGTCCTCCTCCAACAGCCCAAGCAGCCGGCTA
CATCGCATGCGGCGGCACCCACGGCGCCAGTGGCCGCGGGTACCAGCACC
TCTGGTTCCACTGCTGACGACGATGATGCCAGAGGCCCGCTTGGCTTTCC
CGAGCCGAGCTTCTCGCCGGTCCTCAAGGTCGTCGACTGCGACAGCTTCA
CCCTAGTCTCACAAGCGACTGGGCGCCGCTGGAGGGCGATCGACTCCTCT
AGGGAGTGCCAGTTCGGGGAGGTACTGCGTGCTGTAGAGCTGTCAGACGA
AGCTGGGGCACGGCCGGGGTACTTCGCTATCAAGGTATGA
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Coding sequence (CDS) from alignment at Scaffold_284:302..691-

>EsuBft2068_2a-0001 ID=EsuBft2068_2a-0001|Name=EsuBft2068_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_284:302..691- (Ectocarpus subulatus male Bft15b)
ATGAAGCGTCACAGGTCGGCCCCAACCCCCAAGCAACGCACGCCGACCAC
GAGGACCGTTCCCGAACCAGTCCTCCTCCAACAGCCCAAGCAGCCGGCTA
CATCGCATGCGGCGGCACCCACGGCGCCAGTGGCCGCGGGTACCAGCACC
TCTGGTTCCACTGCTGACGACGATGATGCCAGAGGCCCGCTTGGCTTTCC
CGAGCCGAGCTTCTCGCCGGTCCTCAAGGTCGTCGACTGCGACAGCTTCA
CCCTAGTCTCACAAGCGACTGGGCGCCGCTGGAGGGCGATCGACTCCTCT
AGGGAGTGCCAGTTCGGGGAGGTACTGCGTGCTGTAGAGCTGTCAGACGA
AGCTGGGGCACGGCCGGGGTACTTCGCTATCAAGGTATGA
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