EsuBft2064_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2064_7a-0001
Unique NameEsuBft2064_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:23668..26581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4530.OS08T0125300-01
ProteomeIdEsuBft2064_7
Protein domainsIPR001584
Protein domainsIPR012337
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length2870
Hectar predicted targeting categoryother localisation
Evalue3.33e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7aEsuBft2064_7aEctocarpus subulatus male Bft15bgeneScaffold_347 23668..26581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7a-0001-exonEsuBft2064_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 23668..25591 -
EsuBft2064_7a-0001-exonagat-exon-51365Ectocarpus subulatus male Bft15bexonScaffold_347 25636..26581 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7a-0001-exonagat-three_prime_utr-7984Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 23668..24139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7a-0001-cdsEsuBft2064_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 24140..25591 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7a-0001-exonagat-five_prime_utr-5185Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 26491..26581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2064_7a-0001EsuBft2064_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 24140..26490 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2870bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG
TTGTGATCAACCCCCTCATCCCCCAGAACCATTTGCCTCTCATGGATATG
AGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA
GGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCGCAACACCCC
CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT
TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC
GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA
AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT
GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT
GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC
GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA
ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG
GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG
GGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC
GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG
CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC
GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG
AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT
CCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCCGGT
TTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGAC
AACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGC
TGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGG
TGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGC
CGCCACATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGT
CGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCG
CCTGCTTCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCG
TTTGAGGCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTT
CCAGGAGGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAAT
CCGCGCGGTGCTTCTACTTGCACGGCGCCAACAACCACTCGACGTCTACC
GCTGTCGTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGT
CGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGCCGGGCATCG
GGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCT
GCGGCCGCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATA
CATCCCGCCTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGC
CGATCTTCACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCG
AGTGCACCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACC
ACCGCCCGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCAC
AGCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGT
ACGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTC
GCCGTCAGGTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGA
TGATGGACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTC
GACCAAGGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGATCCGAGCTT
TGGAGGCCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGCCCGTGGATT
CCGGGGGGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGT
GAGGATGTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGACAAGATGCC
TGACCTTCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGAAGACGTTCA
ACGAGGCCATGCGGTCTCAACATTCAGAGTTATGGAATGATGCAATCGGT
CGAGAGTTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCCGGTGTAGCA
ACCAGTAGAGAACGCCATCAATGCTAAGTGGGTCTTTAACTGTAAGGCAG
ACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGG
GACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGT
ATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATC
TTGACTTGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTT
GATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGG
CTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCAGGCATCAC
GACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTG
CAGTGTCTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGTCATGT
GATCATGATCATCGTCGTCC
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protein sequence of EsuBft2064_7a-0001

>EsuBft2064_7 ID=EsuBft2064_7|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=768bp
MDMSMFLGVGLMDGKDSVPQDDFFPDALDACDSATPPPPAFPVMSDDLEC
LKGFVAGCSEQQTVAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHAS
TGHVNEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVP
FGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDTLKFVQR
FLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNA
VVESAIWRAMKGGHAARRHILAMGHVDLSSVPNVGRFLADMNGMGTPGCF
RMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGH
AARRHILAMGHVDLSSVPNVGVNGHRLWLASALWASACFNRSATKANLGW
MSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLHGANNHS
TSTAVVLRADTGRLALTNNVVWVNRRAGAPAPVPGIGGGSSVTAAPSPGA
AVPAAAAAPPPPPSTRMYTYIPPAPPTTTPPPPASPPIFTGSSAPSPIST
ASSSAPPSTVATPPRPPPTPPPASAAAPAPHHPPLSQRAVRELGEKETRV
HGRTRGDRVRFMDEQQQPPSPSGGGTALHHRLGLLAMMDKDSLISSLATR
EAVDQGRCDPPPPPPPDPSFGGRESGGAVGAGGPVDSGGGGRPQMFATMF
ATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSQHSELWND
AIGREFFGLLDAGTFSPV
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mRNA from alignment at Scaffold_347:23668..26581-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2914bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG TTGTGATCAACCCCCTCATCCCCCAGAACCATTTGCCTCTCATGGATATG AGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA GGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCGCAACACCCC CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG GGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT CCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGTCA ACGGNTGCGGGCCACGAGCGACACCCTGAACTTCGTGCAGCGGTTTCTCG CCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGC GGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCAT TCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCG AGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCAC ATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGT CAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCT TCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCGTTTGAG GCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTTCCAGGA GGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAATCCGCGC GGTGCTTCTACTTGCACGGCGCCAACAACCACTCGACGTCTACCGCTGTC GTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTG GGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGCCGGGCATCGGGGGGG GTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCTGCGGCC GCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATACATCCC GCCTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGCCGATCT TCACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCGAGTGCA CCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACCACCGCC CGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAG CCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGC GGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTC AGGTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGATGATGG ACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTCGACCAA GGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGATCCGAGCTTTGGAGG CCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGCCCGTGGATTCCGGGG GGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGTGAGGAT GTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGACAAGATGCCTGACCT TCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGAAGACGTTCAACGAGG CCATGCGGTCTCAACATTCAGAGTTATGGAATGATGCAATCGGTCGAGAG TTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCCGGTGTAGCAACCAGT AGAGAACGCCATCAATGCTAAGTGGGTCTTTAACTGTAAGGCAGACGAGT ACGGATGGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGGGACATG CAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATCAGT GTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCTTGACT TGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAG GATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGGCTTGAT CGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACGACATT GGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGT CTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGTCATGTGATCAT GATCATCGTCGTCC
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Coding sequence (CDS) from alignment at Scaffold_347:23668..26581-

>EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2307bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)
ATGGATATGAGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTC
GGTCCCACAGGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCG
CAACACCCCCTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGC
CTGAAAGGTTTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCC
CTCTCTCTCGCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTT
CGGTAGGAAAATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCC
ACCGGCCATGTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGG
CGTACGATTGGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGA
AGGGTAGGCGGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCG
TTCGGCAAAATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGA
CGGCTCCCGGTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAAC
GGGGGTACGGGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGG
TTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGA
CAACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTG
CTGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCG
GTGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCG
CCGCCACATCCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACG
TCGGCCGGTTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTC
CGCATGGACAACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTG
CGACGCTGCTGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGC
AAAACGCGGTGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCAC
GCCGCTCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGT
CCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGT
GGGCATCCGCCTGCTTCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGG
ATGTCTCCGTTTGAGGCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGT
CCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGG
ACGTCCAATCCGCGCGGTGCTTCTACTTGCACGGCGCCAACAACCACTCG
ACGTCTACCGCTGTCGTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCAC
CAACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGC
CGGGCATCGGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCC
GCCGTACCTGCGGCCGCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGAT
GTACACATACATCCCGCCTGCACCACCGACCACCACACCGCCGCCGCCCG
CTTCTCCGCCGATCTTCACAGGATCATCAGCCCCGTCGCCGATCTCCACG
GCGTCGTCGAGTGCACCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACC
GCCGACACCACCGCCCGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGC
CGCTTTCACAGCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTA
CATGGCCGTACGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCA
ACCGCCGTCGCCGTCAGGTGGCGGCACCGCTCTCCACCACCGCCTTGGAC
TGTTGGCGATGATGGACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGC
GAGGCCGTCGACCAAGGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGA
TCCGAGCTTTGGAGGCCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGC
CCGTGGATTCCGGGGGGGGGGGGAGACCGCAGATGTTCGCAACGATGTTC
GCCACCCGTGAGGATGTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGA
CAAGATGCCTGACCTTCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGA
AGACGTTCAACGAGGCCATGCGGTCTCAACATTCAGAGTTATGGAATGAT
GCAATCGGTCGAGAGTTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCC
GGTGTAG
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