Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4530.OS08T0125300-01 |
| ProteomeId | EsuBft2064_7 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 35493|Streptophyta |
| Length | 2870 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.33e-16 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2870bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG
TTGTGATCAACCCCCTCATCCCCCAGAACCATTTGCCTCTCATGGATATG
AGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA
GGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCGCAACACCCC
CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT
TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC
GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA
AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT
GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT
GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC
GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA
ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG
GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG
GGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC
GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG
CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC
GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG
AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT
CCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCCGGT
TTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGAC
AACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGC
TGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGG
TGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGC
CGCCACATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGT
CGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCG
CCTGCTTCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCG
TTTGAGGCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTT
CCAGGAGGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAAT
CCGCGCGGTGCTTCTACTTGCACGGCGCCAACAACCACTCGACGTCTACC
GCTGTCGTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGT
CGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGCCGGGCATCG
GGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCT
GCGGCCGCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATA
CATCCCGCCTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGC
CGATCTTCACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCG
AGTGCACCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACC
ACCGCCCGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCAC
AGCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGT
ACGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTC
GCCGTCAGGTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGA
TGATGGACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTC
GACCAAGGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGATCCGAGCTT
TGGAGGCCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGCCCGTGGATT
CCGGGGGGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGT
GAGGATGTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGACAAGATGCC
TGACCTTCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGAAGACGTTCA
ACGAGGCCATGCGGTCTCAACATTCAGAGTTATGGAATGATGCAATCGGT
CGAGAGTTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCCGGTGTAGCA
ACCAGTAGAGAACGCCATCAATGCTAAGTGGGTCTTTAACTGTAAGGCAG
ACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGG
GACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGT
ATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATC
TTGACTTGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTT
GATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGG
CTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCAGGCATCAC
GACATTGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTG
CAGTGTCTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGTCATGT
GATCATGATCATCGTCGTCC back to topprotein sequence of EsuBft2064_7a-0001 >EsuBft2064_7 ID=EsuBft2064_7|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=768bp
MDMSMFLGVGLMDGKDSVPQDDFFPDALDACDSATPPPPAFPVMSDDLEC
LKGFVAGCSEQQTVAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHAS
TGHVNEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGTRAAVP
FGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGMRAKSDTLKFVQR
FLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNA
VVESAIWRAMKGGHAARRHILAMGHVDLSSVPNVGRFLADMNGMGTPGCF
RMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVESAIWRAMKGGH
AARRHILAMGHVDLSSVPNVGVNGHRLWLASALWASACFNRSATKANLGW
MSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLHGANNHS
TSTAVVLRADTGRLALTNNVVWVNRRAGAPAPVPGIGGGSSVTAAPSPGA
AVPAAAAAPPPPPSTRMYTYIPPAPPTTTPPPPASPPIFTGSSAPSPIST
ASSSAPPSTVATPPRPPPTPPPASAAAPAPHHPPLSQRAVRELGEKETRV
HGRTRGDRVRFMDEQQQPPSPSGGGTALHHRLGLLAMMDKDSLISSLATR
EAVDQGRCDPPPPPPPDPSFGGRESGGAVGAGGPVDSGGGGRPQMFATMF
ATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSQHSELWND
AIGREFFGLLDAGTFSPV back to topmRNA from alignment at Scaffold_347:23668..26581- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2914bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)
GTCTGAGATTGTTTCTCCCTCCGTCGTTGACCCGAGCGATTCTCGTGAAG
TTGTGATCAACCCCCTCATCCCCCAGAACCATTTGCCTCTCATGGATATG
AGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTCGGTCCCACA
GGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCGCAACACCCC
CTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGCCTGAAAGGT
TTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCCCTCTCTCTC
GCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTTCGGTAGGAA
AATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCCACCGGCCAT
GTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGGCGTACGATT
GGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGAAGGGTAGGC
GGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCGTTCGGCAAA
ATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGACGGCTCCCG
GTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACG
GGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGGTTTCTCGCC
GACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGG
CGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCATTC
GGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCGAG
AGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCACAT
CCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGTCA
ACGGNTGCGGGCCACGAGCGACACCCTGAACTTCGTGCAGCGGTTTCTCG
CCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGACAACGGC
GGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTGCTGGCAT
TCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCGGTGGTCG
AGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCGCCGCCAC
ATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACGTCGGCGT
CAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGCT
TCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGGATGTCTCCGTTTGAG
GCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGTCCCTTTTTTCCAGGA
GGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGGACGTCCAATCCGCGC
GGTGCTTCTACTTGCACGGCGCCAACAACCACTCGACGTCTACCGCTGTC
GTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCACCAACAACGTCGTGTG
GGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGCCGGGCATCGGGGGGG
GTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCCGCCGTACCTGCGGCC
GCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGATGTACACATACATCCC
GCCTGCACCACCGACCACCACACCGCCGCCGCCCGCTTCTCCGCCGATCT
TCACAGGATCATCAGCCCCGTCGCCGATCTCCACGGCGTCGTCGAGTGCA
CCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACCGCCGACACCACCGCC
CGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAG
CCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGC
GGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTC
AGGTGGCGGCACCGCTCTCCACCACCGCCTTGGACTGTTGGCGATGATGG
ACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGCGAGGCCGTCGACCAA
GGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGATCCGAGCTTTGGAGG
CCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGCCCGTGGATTCCGGGG
GGGGGGGGAGACCGCAGATGTTCGCAACGATGTTCGCCACCCGTGAGGAT
GTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGACAAGATGCCTGACCT
TCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGAAGACGTTCAACGAGG
CCATGCGGTCTCAACATTCAGAGTTATGGAATGATGCAATCGGTCGAGAG
TTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCCGGTGTAGCAACCAGT
AGAGAACGCCATCAATGCTAAGTGGGTCTTTAACTGTAAGGCAGACGAGT
ACGGATGGCCGACGAAATTCAAGGCAAGACTTGTAGCGCGGGGGGACATG
CAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATCAGT
GTCTAGTGTGCGCTTGTTGGCAGCATTAGCATGTGAGCAGAATCTTGACT
TGTGCCATTTCGATATTCAGCAGGCTTTTGTGCAGTCTGAGCTTGATGAG
GATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGGTTATCTGGCTTGAT
CGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCAGGCATCACGACATT
GGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGTTTTTTGCAGTGT
CTGGCGGATGCATGTGTTTTTCGATTGATGGAGGAGGGTCATGTGATCAT
GATCATCGTCGTCC back to topCoding sequence (CDS) from alignment at Scaffold_347:23668..26581- >EsuBft2064_7a-0001 ID=EsuBft2064_7a-0001|Name=EsuBft2064_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2307bp|location=Sequence derived from alignment at Scaffold_347:23668..26581- (Ectocarpus subulatus male Bft15b)
ATGGATATGAGCATGTTCCTTGGTGTTGGCCTGATGGATGGAAAAGACTC
GGTCCCACAGGATGATTTTTTTCCGGATGCGCTTGATGCTTGCGATTCCG
CAACACCCCCTCCCCCCGCGTTTCCCGTGATGAGTGATGACTTGGAGTGC
CTGAAAGGTTTTGTTGCTGGATGCAGTGAGCAGCAGACCGTAGCTCCCCC
CTCTCTCTCGCATGCCTTGGCGATTATCGCCCCCGGTGCTTCCCCATTTT
CGGTAGGAAAATCCACGCCCACCATCGACATTAATTTGTTCCATGCCTCC
ACCGGCCATGTCAACGAATTCTTGATGCGTGAAACGGCCAAGCAGCAGGG
CGTACGATTGGTGGGGGAGATGCAGCCGTGTGTGGGCTGCGTGGAAGCGA
AGGGTAGGCGGGCCCCGGTGCCGCGGCGTGGCACCCGCGCGGCGGTACCG
TTCGGCAAAATCCACATCGACCTCACGGGCCCGTTCTCTGACGCGTTGGA
CGGCTCCCGGTATCTGATCATGTTCGTGGACAGCGCATCGCGGTGGCAAC
GGGGGTACGGGATGCGGGCCAAGAGCGACACCCTGAAGTTCGTGCAGCGG
TTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTCCGCATGGA
CAACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTGCGACGCTG
CTGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGCAAAACGCG
GTGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCACGCCGCTCG
CCGCCACATCCTTGCCATGGGCCACGTCGACCTCTCCTCCGTCCCCAACG
TCGGCCGGTTTCTCGCCGACATGAACGGCATGGGCACTCCGGGGTGTTTC
CGCATGGACAACGGCGGCGAGTTCACCGGCTCCGCGTTCACCTCGTTCTG
CGACGCTGCTGGCATTCGGCGCGAGTACACCGCCCCCGACACCCCCAAGC
AAAACGCGGTGGTCGAGAGCGCCATTTGGCGCGCCATGAAGGGGGGCCAC
GCCGCTCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTCTCCTCCGT
CCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTCGGCGCTGT
GGGCATCCGCCTGCTTCAACCGCTCGGCGACGAAGGCCAACCTGGGCTGG
ATGTCTCCGTTTGAGGCGTTCTTCGGCCGGAAACCGCCCCTCACCGTCGT
CCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCTACCAAGGCGG
ACGTCCAATCCGCGCGGTGCTTCTACTTGCACGGCGCCAACAACCACTCG
ACGTCTACCGCTGTCGTTCTTCGCGCTGACACCGGTCGCCTCGCCCTCAC
CAACAACGTCGTGTGGGTCAACCGCCGGGCAGGAGCGCCGGCCCCGGTGC
CGGGCATCGGGGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGGCGCC
GCCGTACCTGCGGCCGCTGCCGCACCGCCGCCGCCCCCGTCGACAAGGAT
GTACACATACATCCCGCCTGCACCACCGACCACCACACCGCCGCCGCCCG
CTTCTCCGCCGATCTTCACAGGATCATCAGCCCCGTCGCCGATCTCCACG
GCGTCGTCGAGTGCACCGCCGTCCACCGTAGCCACGCCGCCCCGTCCACC
GCCGACACCACCGCCCGCAAGCGCCGCCGCTCCCGCTCCCCATCACCCGC
CGCTTTCACAGCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTA
CATGGCCGTACGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCA
ACCGCCGTCGCCGTCAGGTGGCGGCACCGCTCTCCACCACCGCCTTGGAC
TGTTGGCGATGATGGACAAGGACTCCCTCATCTCGTCGCTGGCCACCCGC
GAGGCCGTCGACCAAGGACGGTGTGACCCACCGCCTCCGCCGCCGCCGGA
TCCGAGCTTTGGAGGCCGTGAGAGCGGGGGGGCAGTGGGAGCTGGGGGGC
CCGTGGATTCCGGGGGGGGGGGGAGACCGCAGATGTTCGCAACGATGTTC
GCCACCCGTGAGGATGTGGACGCCGCACTTCGCGCCGAGCGCCCGCCCGA
CAAGATGCCTGACCTTCCGCACTGCATGGCCAGCGACCTCCGCGAGCCGA
AGACGTTCAACGAGGCCATGCGGTCTCAACATTCAGAGTTATGGAATGAT
GCAATCGGTCGAGAGTTTTTCGGTTTGTTGGATGCAGGAACTTTTAGTCC
GGTGTAG back to top
|