EsuBft2050_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2050_6a-0001
Unique Name	EsuBft2050_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_376	contig	Scaffold_376:20244..21462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2050_6
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	121
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_6a	EsuBft2050_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_376 20244..21462 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_6a-0001-exon	EsuBft2050_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 20244..21462 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_6a-0001-cds	EsuBft2050_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_376 20244..21158 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_6a-0001-exon	agat-three_prime_utr-7900	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 21159..21462 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_6a-0001	EsuBft2050_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_376 20244..21158 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_376:20244..21462+
coding sequence from alignment at Scaffold_376:20244..21462+

spliced messenger RNA

>EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGAAACACAATCCCCTGAGAGGAGACATATTTTTTTGG
CATTGTGTTTTGGGAGCTGGTATGCGTACGTTTTTTCAGTTTTCGCAATG
CTGTGTAGCGTGTAGAGGTCACCAGTCCCCGGCACCCACGTTTGTTTTGT
GTTGTGTGCCGTGTTCTCTCTTGTAGACCATGTAGCCCGCTTGTTTTTTT
TTCTGCACGGGCTACGGCAGCAGCAGCAATGTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft2050_6a-0001

>EsuBft2050_6 ID=EsuBft2050_6|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=304bp
MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSPSTSDG
SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQA
PRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKID
DLRGKLEFTLEGPKAMALRASISALYDMDDADFMPKPISAPTPPAAGGAP
STSASASVSSAAPPPATTPEVTALPASITTSPAASTPASAAGLVTLPTSV
SSSPDTPTPTSSVRDAAPIVLGATRARTRANGLPGFTGARKRGVGDVGHE
ERRV

mRNA from alignment at Scaffold_376:20244..21462+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGAAACACAATCCCCTGAGAGGAGACATATTTTTTTGG
CATTGTGTTTTGGGAGCTGGTATGCGTACGTTTTTTCAGTTTTCGCAATG
CTGTGTAGCGTGTAGAGGTCACCAGTCCCCGGCACCCACGTTTGTTTTGT
GTTGTGTGCCGTGTTCTCTCTTGTAGACCATGTAGCCCGCTTGTTTTTTT
TTCTGCACGGGCTACGGCAGCAGCAGCAATGTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_376:20244..21462+

>EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=915bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGA