EsuBft2036_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2036_3a-0001
Unique NameEsuBft2036_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_284contigScaffold_284:160430..160963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJ59
ProteomeIdEsuBft2036_3
Protein domainsIPR029030
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length53
Hectar predicted targeting categoryno signal peptide or anchor
Evalue3.79e-11
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameMCA5
Descriptioncysteine-type peptidase activity
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2036_3aEsuBft2036_3aEctocarpus subulatus male Bft15bgeneScaffold_284 160430..160963 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2036_3a-0001-exonEsuBft2036_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_284 160430..160963 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2036_3a-0001-exonagat-three_prime_utr-7793Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_284 160430..160786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2036_3a-0001-cdsEsuBft2036_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_284 160787..160963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2036_3a-0001EsuBft2036_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_284 160787..160963 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2036_3a-0001 ID=EsuBft2036_3a-0001|Name=EsuBft2036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=534bp|location=Sequence derived from alignment at Scaffold_284:160430..160963- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACGT
TTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACGA
ACGCCATGCTCCTTACGTTGGTGGGTGTCGCGGTTGCATCGAAGCTAATA
GGTTATGGCCAAGAAAGTTTGCGATGAAGCAAGAAAGAAGAAGCGACGAT
GGGATGGTAGGTGGGCGTTGCTGGTGCTGCTGCTGTACTCACAGACGGGA
ATCATTTGGGTGTCGCGTTTGATCGAGGTCTGGCCTCGAGTGCTGAGCGT
ATCCTGACTGCTATACTTCGAGTTGGGCTAGCTCTGCTGCTGCCACAACA
ACGGTGTGCGCTCGGTGCTTTTCGGTGTGCAGACTCTTCCGCCTGCCTGA
CTATTCCCCACCAAGATACTGTTGCGTATTTGGCTCTGTCTCTTGCGCCA
ATGCTGATCCTTTGGTGCTACTCGTGTGTTCGGTTGGCGTACACACCACC
CCTCCCTGCCAGAGTGACGACCACTCCGACTCGT
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protein sequence of EsuBft2036_3a-0001

>EsuBft2036_3 ID=EsuBft2036_3|Name=EsuBft2036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MFSGCMDSQTSADVKDVSKFGLPDADGAGGACTNAMLLTLVGVAVASKLI
GYGQESLR
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mRNA from alignment at Scaffold_284:160430..160963-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2036_3a-0001 ID=EsuBft2036_3a-0001|Name=EsuBft2036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=534bp|location=Sequence derived from alignment at Scaffold_284:160430..160963- (Ectocarpus subulatus male Bft15b)
ATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACGT
TTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACGA
ACGCCATGCTCCTTACGTTGGTGGGTGTCGCGGTTGCATCGAAGCTAATA
GGTTATGGCCAAGAAAGTTTGCGATGAAGCAAGAAAGAAGAAGCGACGAT
GGGATGGTAGGTGGGCGTTGCTGGTGCTGCTGCTGTACTCACAGACGGGA
ATCATTTGGGTGTCGCGTTTGATCGAGGTCTGGCCTCGAGTGCTGAGCGT
ATCCTGACTGCTATACTTCGAGTTGGGCTAGCTCTGCTGCTGCCACAACA
ACGGTGTGCGCTCGGTGCTTTTCGGTGTGCAGACTCTTCCGCCTGCCTGA
CTATTCCCCACCAAGATACTGTTGCGTATTTGGCTCTGTCTCTTGCGCCA
ATGCTGATCCTTTGGTGCTACTCGTGTGTTCGGTTGGCGTACACACCACC
CCTCCCTGCCAGAGTGACGACCACTCCGACTCGT
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Coding sequence (CDS) from alignment at Scaffold_284:160430..160963-

>EsuBft2036_3a-0001 ID=EsuBft2036_3a-0001|Name=EsuBft2036_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_284:160430..160963- (Ectocarpus subulatus male Bft15b)
ATGTTCTCGGGCTGCATGGACAGCCAGACCTCCGCGGACGTGAAGGACGT
TTCCAAGTTCGGGCTGCCCGACGCGGACGGGGCCGGCGGCGCTTGCACGA
ACGCCATGCTCCTTACGTTGGTGGGTGTCGCGGTTGCATCGAAGCTAATA
GGTTATGGCCAAGAAAGTTTGCGATGA
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