EsuBft2027_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2027_3a-0001
Unique NameEsuBft2027_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:259829..260259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC002223-PA
ProteomeIdEsuBft2027_3
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length431
Hectar predicted targeting categoryother localisation
Evalue6.97e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005488
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_3aEsuBft2027_3aEctocarpus subulatus male Bft15bgeneScaffold_100 259829..260259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_3a-0001-exonEsuBft2027_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 259829..260259 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_3a-0001-exonagat-five_prime_utr-5012Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 259829..259998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_3a-0001-cdsEsuBft2027_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 259999..260259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_3a-0001EsuBft2027_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 259999..260259 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2027_3a-0001 ID=EsuBft2027_3a-0001|Name=EsuBft2027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=431bp|location=Sequence derived from alignment at Scaffold_100:259829..260259+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCTTTCGACGAC
AGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGAAGGAGATTTTGTTTT
TGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATC
CCCGTCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCAT
CTCAAACTCGAACTCGAAGCACATTGATGTAAGGCACCATTTTCTCAGGG
AACTGGTAGAGAGGAAGGAGATTTCGGTGATTCACGTGCCGTCTCCGTAC
CAGCGTGCAGACTTTCTTACGAAAAGTTTGCCCAAGGATGCGTTCGAGTC
TCACCGTGATTTTGTGATGAATTTGGCATGA
back to top

protein sequence of EsuBft2027_3a-0001

>EsuBft2027_3 ID=EsuBft2027_3|Name=EsuBft2027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKE
ISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNLA
back to top

mRNA from alignment at Scaffold_100:259829..260259+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2027_3a-0001 ID=EsuBft2027_3a-0001|Name=EsuBft2027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=431bp|location=Sequence derived from alignment at Scaffold_100:259829..260259+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCTTTCGACGAC
AGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGAAGGAGATTTTGTTTT
TGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATC
CCCGTCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCAT
CTCAAACTCGAACTCGAAGCACATTGATGTAAGGCACCATTTTCTCAGGG
AACTGGTAGAGAGGAAGGAGATTTCGGTGATTCACGTGCCGTCTCCGTAC
CAGCGTGCAGACTTTCTTACGAAAAGTTTGCCCAAGGATGCGTTCGAGTC
TCACCGTGATTTTGTGATGAATTTGGCATGA
back to top

Coding sequence (CDS) from alignment at Scaffold_100:259829..260259+

>EsuBft2027_3a-0001 ID=EsuBft2027_3a-0001|Name=EsuBft2027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_100:259829..260259+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCGTCTTCGAGGACAACCA
GGGGGCGATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGC
ACATTGATGTAAGGCACCATTTTCTCAGGGAACTGGTAGAGAGGAAGGAG
ATTTCGGTGATTCACGTGCCGTCTCCGTACCAGCGTGCAGACTTTCTTAC
GAAAAGTTTGCCCAAGGATGCGTTCGAGTCTCACCGTGATTTTGTGATGA
ATTTGGCATGA
back to top