EsuBft2027_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2027_2a-0001
Unique NameEsuBft2027_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:246742..248488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2027_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length70
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_2aEsuBft2027_2aEctocarpus subulatus male Bft15bgeneScaffold_100 246742..248488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_2a-0001-exonagat-exon-62590Ectocarpus subulatus male Bft15bexonScaffold_100 246742..247335 -
EsuBft2027_2a-0001-exonEsuBft2027_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 248381..248488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_2a-0001-cdsEsuBft2027_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 246742..247293 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_2a-0001-exonagat-five_prime_utr-5010Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 247294..247335 -
EsuBft2027_2a-0001-exonagat-five_prime_utr-5011Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 248381..248488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2027_2a-0001EsuBft2027_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 246742..247293 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2027_2a-0001 ID=EsuBft2027_2a-0001|Name=EsuBft2027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=702bp|location=Sequence derived from alignment at Scaffold_100:246742..248488- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGGTCGTGGACAAGCGTGTCAACGACAGAACCTTCATCTATCTCTAGG
AGCAAGCCACCGCTCACGGCATCACTCCTTGAAACTTGGCGTCAGCTGGC
ATAACACGAGGACACCATGTCCAGCGGCAAAGTGGAACTCCTGGGCGACA
ATGTGGAAATCCTTGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAG
CAGTTTCCAGCGGCGGGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGT
GTTTGTTCACCGTCGATGATTTGCTGGACGACATCGCCACAGCAGATCCG
GCGGAACTAGAGCGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATAT
CGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTT
TCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCCCCACGACGAGTTT
ATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAA
GATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGC
GCTTGGCGCAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAG
GAGGAGGGTGAGGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGA
ACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGNN
NN
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protein sequence of EsuBft2027_2a-0001

>EsuBft2027_2 ID=EsuBft2027_2|Name=EsuBft2027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=184bp
MWKSLTTNPRARLPPQSSFQRRVQKTRAPPCPWCLFTVDDLLDDIATADP
AELERAYNTGRVSLEDIVEAAHLSSDSPLFVPPFSLPPEDRLILLPHDEF
MAYQRLNEMWCDGLAGKIAEAEAREQAKREDAERLAQREAALAAAARKQE
EEGEAVRAAAARKQEEEREAALAAAARKQEEERX
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mRNA from alignment at Scaffold_100:246742..248488-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2027_2a-0001 ID=EsuBft2027_2a-0001|Name=EsuBft2027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1747bp|location=Sequence derived from alignment at Scaffold_100:246742..248488- (Ectocarpus subulatus male Bft15b)
CGTGGTCGTGGACAAGCGTGTCAACGACAGAACCTTCATCTATCTCTAGG
AGCAAGCCACCGCTCACGGCATCACTCCTTGAAACTTGGCGTCAGCTGGC
ATAACACGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGTGTTG
TTGCCACGCATTTTTCACAACCACCGGGTTGCTTGTTATTTGGTCTCACC
ACCCACGAGAATCTAGACTTAGCCTCTTCTCTGCTTCCTCTCCTGTAGAG
ATGCTGGCTTGTGATGCTATTGCGAAGCGCCCGCGGGACTGGGACCTTGC
AAAGGATACGCGCCTTGTAGGCCATCGCGATGTTTTGGGTGATTTCTCGT
ACATTCACCGCTCCTCGAAAGCTGTTTTGTCTGCATCGGCGGTCCATGAA
CTGATTTCTGTGGCGGATACCCTCTGCATGGAGCGTCCTGAGTTGGTGGC
CTTGTGTAGTGGGACCCGAGATGACAGCATGCTTCCCACGTCTGCTACCA
CCTCTACTGCATTCATGCCGGCGTACCGGCCGATGTCCGCGGATTTTCCT
GTTGTGCTGTCCGATTTGACTCCGCTTGCATCGACTTGGAACGCGATGTG
TGCACACAAATTGGGTGTCAGCGGCCCCACCAGCCTTCCCTCCATCTTTC
GAAATCACATGGCACTTTTTTTCGGGGAATCGTTCACCCTCATACATTTG
AATTGGAAACCTTTCAACAGTGCAAACCCACAGCGGTCTTTGCTCGCACT
TCGGCACCAGTTGCGGAGGAACGCCGTGCTGCTATGCGTGTCTTTTGGTC
GGAAATCCTCGTGTCTCCATGCAACACGGGCCCTTTTGTGGTAGCTTTTG
CTGCTGTTTGTAAGTGGCATGGTGTGCTTTTGGACGCTTTTCCTGCTTGG
TTGGATCCGCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGGCGTAT
GCTATCTTGTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGCTCTTC
CCGAAGTTGCACCCGGCTTTACTGCTTCTGCTGCTCTTGGTGCTGCTGCC
TCAACTGCGGTTGGTTATCCTACATCTACTGTTTCTGGCCCTGCTGCCCT
TTCCAAAATCGATCGTAGCTACCCTCTCTCTGGCCCTGCTCTTGTTAACA
AAGAGGACACCATGTCCAGCGGCAAAGTGGAACTCCTGGGCGACAATGTG
GAAATCCTTGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAGCAGTT
TCCAGCGGCGGGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGTGTTTG
TTCACCGTCGATGATTTGCTGGACGACATCGCCACAGCAGATCCGGCGGA
ACTAGAGCGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTAG
AAGCGGCCCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTTTCTCG
CTCCCGCCGGAAGACAGATTAATCCTCTTGCCCCACGACGAGTTTATGGC
GTACCAAAGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAAGATAG
CAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTG
GCGCAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGA
GGGTGAGGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAACGTG
AGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGNNNN
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Coding sequence (CDS) from alignment at Scaffold_100:246742..248488-

>EsuBft2027_2a-0001 ID=EsuBft2027_2a-0001|Name=EsuBft2027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_100:246742..248488- (Ectocarpus subulatus male Bft15b)
ATGTGGAAATCCTTGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAG
CAGTTTCCAGCGGCGGGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGT
GTTTGTTCACCGTCGATGATTTGCTGGACGACATCGCCACAGCAGATCCG
GCGGAACTAGAGCGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATAT
CGTAGAAGCGGCCCATCTGTCGTCCGATTCCCCCCTTTTCGTTCCTCCTT
TCTCGCTCCCGCCGGAAGACAGATTAATCCTCTTGCCCCACGACGAGTTT
ATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAA
GATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGC
GCTTGGCGCAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAG
GAGGAGGGTGAGGCTGTTCGGGCTGCTGCGGCGAGGAAGCAGGAGGAGGA
ACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGNN
NN
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